Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00370 ATGAAGAGGGGTAGGTCATCATATTCCGATGGTGAAGAGGAGTACGAGTCTGAGATTCAGTCAATCTCTGTGTCGAATTACCATCTTGTAGACGATGAGGACAATCCTGTGTCTTTTGCTGTGTTGCCAATTCAATGGAATGATTCTGAGAACTCTGGTGCCTGCAAAGAGAAGGTGTTTCTATACGGGGATGCCGATAGTGGGCTGTTGAAGACTTTCATGCAAGTGACGGCGTGGAGATTTGATCTTTCCAATGTCAGACCCGAGGTATTCTTGCTGGCAAAGGATGGAAGGTGGATCAACCTTCAGAAGCCTAGAAAGAGTTTTCAAGAAGAAGTAAGGACTGTTTTGGTCACCCTTCACTTCCTCCATAGTGTGAAGAGAAAGCATCAAATGTCTGTGGGATCTTTCTGGCAAGACTTCAGCAAGGATAAGGAGTTGATTTCTTACGGTTTTAAGCCCTCAAAACATGACTTATCGGACCACATGCTTTTGATTGGCGAAGCTTCCAAAAGGGATGCTATCTTAGCAAAGTCCAAGCTTTTGCTCGTGGTTTTGGAGAAACTGAAGAGTCAAAAGCTTCTTAACGAGGAAGTTAATGATTTTGAACTGCCAGGACTTCCTGTTGGTGGAACTGACAGTGATATGACAGACAAGTCTGATGAAGAGACTGAAGAAACGGATGCTTTGGATGTTTGTGCACTTTGTGACAATGGTGGTAATGTTATATGTTGTGATGGCGTGTGCATGAGATCATTTCATGCCACCGAGGAAGCTGGTAGAGAAAATTGTTGTTTATCTCTTGGTTTTACCCAGAAGGAAGTTGATGAGATCCAGAACTTTTATTGTAAGAATTGTGAATATCGTCAACACCAATGCTTTGCATGCGGCAAACTGGGGTCTTCTGATAAACTTAACAATGTAGAGGTTTTTAAATGTACTTCTGCAACCTGTGACCGTTTTTATCATCCACGTTGTGTTGCAAAATTACTTCCCAAGGTGGTTAAGGATGTTACAGAGGAATTTGAGAGAAATATTGCTGATGGGATTCCTTTTACTTGTCCCCTTCATTATTGTTGTGTCTGTAAAGGATTGGAAAATACTATGGATCCTGAGTTGCAGTTTGCTGTTTGTAGACGTTGTCCAAAGGCATATCATCGTAAATGTTTGCCAAGAGAAATTAGTTCTGAAAAGAATGATATACTAAGGGCTTGGGAAGGTCTTCTACCAAAGAACCGCATTCTTATATATTGCTTAAATCATGAGATTGATCCTGAACTTGGGACTCCTGTAGTAGATCATATAAAATTCCCCGAAATGAAAGCTACTGATCAAAAAATTGATACTACTACTGAGCAGAAAAAGCCTTCAACTAAAAAGATAGTTAAGTTGAAGAAAAATATTCACTCCAATAACTCATCTGGCAAAAGCACTTCTACAGGATCTAAACTGACTGCAAAACTGTTTTCTGATAAAGTTGGTAGCAAGAAGTCATCTGATAAGAGAATTTCTAGTTCAAATATGTCGAAAAAGCCAAACTCAAAAGAAACATCAAGGTGTTTGACTGAAAATAAGATGCCAATTTTGAAGAAATTTGAAATTCCTGACACTGAGCAAACATATAACCAGCTTACAGTTGGTAAGGATGAGGGTTCGGAGCAAATTAAACGGGGCAATCAGATAAATAAAGTGAATACTAACTTCTCATCTGTCAAGCCTAGTGGAGAGTTGAGTGTTGAATTGCCTCGACTGGATGCTGGTTCGGAAAAGAATTTGTTGGCTTTATTTAAAGAAGCTAGTTCATCCACTACGATGGAGAATGTCTTTGAAAAGCTCACTCATAGTCACTCGTTGAGAAATGTTGTGGAGAAGACCATTACAACAGAGAAATTGGATTCATTGAATTCTGTTCGAGCAGCTTTAAGCATGCTCAGTGGGGGCAGCATTGAGGACTCCAAAGCTGTTCGTGACCCTGATGTTTTGAAACACATATTTAAGTGGAAGATCGCAGATAAACTTCATTGGTATGTTCAGAATGGTGATACGGTAGATCCCCCCTTTAAATACCTGATCGGCATGGTTAATGATATTCAGATTGTGAACTTGAGATGTGGTGCTGATGATTTTAGCATCCTTTTGAAGAAAATGCTTGAGGAGACTGGGAAGAGATGTTCGTACAGAAACTATGATTTACTTCCAACAAAGAATGATTTTAGTTTTGAAAAGAAGAAATGGATGACTGTCCAACAAACCGAGTTACCCACAGGATCACAGTTGATCATTCGTCTCAGCCCTCTCTTTGGTCATAATGTAGCATTGGCTAACAAGTATATAGATAAGGCCCTTGAGTTTAAACCAAAGCTCCTAATTCTTATATTAGCACAAGAGATACAAAGGCTTGATAAGAAGCTATCACGTTATAATCTTATATGGGAGGATAAGAATTTTCTATCAGACACGTCAATTGATCTACCTGGATCAGCTGATGTAAATGACGGACAAATGGATCAAAGGAATGCAAGACCACCTGTACTCTCTCTCTGGAGCCGCTCTGACTGGACTACAAAACACAAGGTCATAGCCCAACAGCATGCTCATGTGTGCAGCGAGCATAAAGTGTCAACGACAGAAAAATTTAAGTCTGACACGTTGGCTTCTGCTGTTCATGCTACCGGTGGAAATTATGCTGACAACTCAAAGTTAACTGATGGCGAAGAATATCAAGCATCTGTAATTGGTGATGTTCAGAACAGAAGCTACAGAAGGGCATGTTATAATGTTGACGAACATAAAAAGGGCAAGTCTGAGAAGTCAGGAAAGAAGAGAAAACATATTGGCGAATCCAAACCAGCCAAAAGGCAGGCTGTAAATAAAATGGCTAATGGAGTACCTGACCACACTCAACAACCAAATCCAATCAAGAAGACAGGTTCTTCGGATTCTGAACTTCGTACATTCCTTAAAAGTGGCAGTTCTGGAAATAGTGGACGACCCCAACCTGGATATGGTGGTGTATTGAATGGTTTTGCTGCTGTTCCTAACTATGTATATGCGAGCCAACATTCGTGTGGTTGGCTCGAAGAGTAG 3087 0.4027 MKRGRSSYSDGEEEYESEIQSISVSNYHLVDDEDNPVSFAVLPIQWNDSENSGACKEKVFLYGDADSGLLKTFMQVTAWRFDLSNVRPEVFLLAKDGRWINLQKPRKSFQEEVRTVLVTLHFLHSVKRKHQMSVGSFWQDFSKDKELISYGFKPSKHDLSDHMLLIGEASKRDAILAKSKLLLVVLEKLKSQKLLNEEVNDFELPGLPVGGTDSDMTDKSDEETEETDALDVCALCDNGGNVICCDGVCMRSFHATEEAGRENCCLSLGFTQKEVDEIQNFYCKNCEYRQHQCFACGKLGSSDKLNNVEVFKCTSATCDRFYHPRCVAKLLPKVVKDVTEEFERNIADGIPFTCPLHYCCVCKGLENTMDPELQFAVCRRCPKAYHRKCLPREISSEKNDILRAWEGLLPKNRILIYCLNHEIDPELGTPVVDHIKFPEMKATDQKIDTTTEQKKPSTKKIVKLKKNIHSNNSSGKSTSTGSKLTAKLFSDKVGSKKSSDKRISSSNMSKKPNSKETSRCLTENKMPILKKFEIPDTEQTYNQLTVGKDEGSEQIKRGNQINKVNTNFSSVKPSGELSVELPRLDAGSEKNLLALFKEASSSTTMENVFEKLTHSHSLRNVVEKTITTEKLDSLNSVRAALSMLSGGSIEDSKAVRDPDVLKHIFKWKIADKLHWYVQNGDTVDPPFKYLIGMVNDIQIVNLRCGADDFSILLKKMLEETGKRCSYRNYDLLPTKNDFSFEKKKWMTVQQTELPTGSQLIIRLSPLFGHNVALANKYIDKALEFKPKLLILILAQEIQRLDKKLSRYNLIWEDKNFLSDTSIDLPGSADVNDGQMDQRNARPPVLSLWSRSDWTTKHKVIAQQHAHVCSEHKVSTTEKFKSDTLASAVHATGGNYADNSKLTDGEEYQASVIGDVQNRSYRRACYNVDEHKKGKSEKSGKKRKHIGESKPAKRQAVNKMANGVPDHTQQPNPIKKTGSSDSELRTFLKSGSSGNSGRPQPGYGGVLNGFAAVPNYVYASQHSCGWLEE 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00370 1028 MobiDBLite consensus disorder prediction 926 999 - -
Vimu1g00370 1028 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 16 879 - -
Vimu1g00370 1028 Pfam Cytosine specific DNA methyltransferase replication foci domain 23 129 IPR022702 -
Vimu1g00370 1028 MobiDBLite consensus disorder prediction 500 521 - -
Vimu1g00370 1028 SMART PHD_3 359 422 IPR001965 -
Vimu1g00370 1028 SMART PHD_3 292 358 IPR001965 -
Vimu1g00370 1028 SMART PHD_3 232 287 IPR001965 -
Vimu1g00370 1028 MobiDBLite consensus disorder prediction 467 486 - -
Vimu1g00370 1028 CDD PHD2_NSD 292 357 - -
Vimu1g00370 1028 MobiDBLite consensus disorder prediction 445 522 - -
Vimu1g00370 1028 MobiDBLite consensus disorder prediction 926 943 - -
Vimu1g00370 1028 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 379 IPR013083 -
Vimu1g00370 1028 MobiDBLite consensus disorder prediction 961 998 - -
Vimu1g00370 1028 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 228 289 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00370 Vimu-Chr1 2189328 2198398 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00370 - - gmx:100806429 1199.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00370 1 2189328 2198398 Vimu1g00370 1 2189328 2198398 ECH
Vimu2g02460 2 20364397 20379511 Vimu1g00370 1 2189328 2198398 PCT