Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00356 ATGCTGAGCAAGGACATTGCAGAAACTATGATAGATGGAATCAAAGTCAGAGTGATAGCAGGAGAAGCTCTTGGAATAAAGTCTCCAATCCACACAAGAACACCAACTATGTACTTGGATTTTTCCCTCAAACCTGGTGCTCACTTGCAGCAACTTATACCAAAATCTTGGAATGCTTTTGTGTATATATTGGAAGGAGAGGGTGTTTTTGGGAACCAAAAGTCTCAACCTGTGACTTCTCATCATATACTTCTTCTTGGTTCTGGGGATGGCCTTGAAGCATGGAACAAATCTTCAAAGGTTCTTAGGTTCATTTTGGTTGGAGGGGAACCCTTGGGGGAACCTGTGGTGCAATTTGGACCTTTTGTGATGAACACTCAAGAAGAGATTGACCAAACAATTGATGATTTTGAGAATTATAGCAATGGATTTGAGAAAGCAAGACACTGGAGATCTGAAACTTCACTTAGCCTTGATTATTGA 483 0.4058 MLSKDIAETMIDGIKVRVIAGEALGIKSPIHTRTPTMYLDFSLKPGAHLQQLIPKSWNAFVYILEGEGVFGNQKSQPVTSHHILLLGSGDGLEAWNKSSKVLRFILVGGEPLGEPVVQFGPFVMNTQEEIDQTIDDFENYSNGFEKARHWRSETSLSLDY 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00356 160 CDD cupin_pirin_C 35 111 - -
Vimu1g00356 160 PANTHER PIRIN-RELATED 3 154 IPR012093 -
Vimu1g00356 160 Gene3D Jelly Rolls 1 112 IPR014710 -
Vimu1g00356 160 Pfam Pirin C-terminal cupin domain 38 142 IPR008778 -
Vimu1g00356 160 PIRSF Pirin 2 151 IPR012093 -
Vimu1g00356 160 SUPERFAMILY RmlC-like cupins 5 152 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00356 Vimu-Chr1 2093077 2093559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00356 3 158 Calmodulin-binding Proteins AT1G50590 66.460 3.29e-72 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00356 K06911 - gmx:100790637 316.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00356 1 2093077 2093559 Vimu1g00356 1 2093077 2093559 ECH
Vimu2g02444 2 20219201 20222366 Vimu1g00356 1 2093077 2093559 PCT