Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00349 ATGCAGAACACAAGAGGTTTTTCTATGTTGAGGCTGTTTCTCTTTGCTATCCTTTTCTTTATCATAGAATGTGCAAGAGGTGAGTTATCAGAATCTGAGTCTTTCTTCAATTTCCTGAGAGCAGTTGATCCCCAAAACGTGCTTAACAAAACTACCTTGGTTGGATCACCATCACATTTATGCTTGGTCAAGTTGAATGGTGTAAGATGTGACTCAAATGCTACTAATATTGTAGATATAAGGCTTGAGAACTTGAACCTTAGTGGCACGATTGATGCAGATTCACTATGCAGGCTCAAAAAGTTAAGAGTGGTGAGCTTGGCTAACAACAACATCAGAGGAACCATTCCACCTTCCATTTTGCATTGTACAAGGTTGACACATTTGAATTTAACCAGCAATCAATTGAGTGGGAGGTTGTCAAAGGCCTTAAGAAAATTGAAAAATCTAAGGAACTTAGACATCTCCAATAACAACTTTTCTGGTATGATCCCAAGTAAACAGCAATATAGGCGATTAGTTACTTACTATGTGACACCAAGTGTTAAGTTGGAAAGCAATAGTACCAAAGAGGGGCTAAAAGAAAGTGACAGAAACACAATGCAGCAACCAACACCAGATTCTTTATCAGACAGTGCTTCTGATAAAGGCACAAGGTCAAAGAAAGGGACAAAATTTTTGGTGGTGTTACTTTTGGGCACTGTGGTGCTTGTGTCATCCCTTTACTTTCTGGTAAGAAAGTCATTAGATTTAACTGAAAGGAGAGAGGTAGTTAAAGAGAAACATGATGTGTCAAAGGATCCATCTACAGAAGTTCAAGAGGTGAACCAAAAGGAAGGAGATTCTAAGCTTGTTTTCTTTGTTGAAGATCGTGAAAGGTTCACAATGGAGGACCTGCTTCGAGCCAGTGCTGATTTGAGGAGTGAAGGCTTTTGCAGCAGCCTTTACAAGGTGAAGTTGGAGAACAATGACCACTATGCAGTCAAAAGATTGAAGAATCTGCAGGTTTCCTTGGAAGAATTTGGTGAAACATTGAGGAAGATTAGTAACTTGAAGCATCAAAATATCCTCCCCCTTGTTGGTTATCGTTCCACCAGTGAAGAAAAATTCGTCATTTACAAATATCAGAACAATGGAAGCCTGCTTAATCTGTTAAAGGATTACATAGCAGGTAGAAAAGATTTCCCATGGAAACTGCGTCTGAATATAGCATGTGGAATTGCAAGGGGTTTAGCCTTCATATATAGGAAGTCAGATGAGAAGGAGGAGGTCATTCCTCATGGAAACCTGAAGCCATCAAACATCCTTCTAGATGAGAACAATGAGCCACTAATAAGTGAGCATGGTCTATCAAAATTCATGGACCCAAATAGAGGTTTTCTGTTTTCCTCTCAGGGATACACAGCTCCTGAAAAGAGCCTAACAGAAAAGGGTGATGTCTACAGCTTTGGAATGATTTTGCTTGAACTGCTAACTGGAAAAAGCATAGAGGTTAGCAGAATAGACCTTGCAAGATGGGTGAGGTCCATGGTGAGGGAGGAATGGACAGGAGAAGTGTTTGACAAGGAAGTTAGGGAGAATGAGCATCAATGGGCGTTTCCTCTTCTGAACATAGCCCTCTTGTGTGTGTCACGTTTCCAAGAAACTAGGCCAACCACTCTGGATATTCTGCAGAAGATAGAGGAGGTCATGGATCAACATGAACAATATCAGGAACGTTTTGCTTCCAAATGCTGTTCCAGTGGATCCAACCGTGATGAATGTTGTTCACTGCACAAAATCATACCTGAAACATGGGATTCTCCAGGATCAAATTATTGA 1821 0.4047 MQNTRGFSMLRLFLFAILFFIIECARGELSESESFFNFLRAVDPQNVLNKTTLVGSPSHLCLVKLNGVRCDSNATNIVDIRLENLNLSGTIDADSLCRLKKLRVVSLANNNIRGTIPPSILHCTRLTHLNLTSNQLSGRLSKALRKLKNLRNLDISNNNFSGMIPSKQQYRRLVTYYVTPSVKLESNSTKEGLKESDRNTMQQPTPDSLSDSASDKGTRSKKGTKFLVVLLLGTVVLVSSLYFLVRKSLDLTERREVVKEKHDVSKDPSTEVQEVNQKEGDSKLVFFVEDRERFTMEDLLRASADLRSEGFCSSLYKVKLENNDHYAVKRLKNLQVSLEEFGETLRKISNLKHQNILPLVGYRSTSEEKFVIYKYQNNGSLLNLLKDYIAGRKDFPWKLRLNIACGIARGLAFIYRKSDEKEEVIPHGNLKPSNILLDENNEPLISEHGLSKFMDPNRGFLFSSQGYTAPEKSLTEKGDVYSFGMILLELLTGKSIEVSRIDLARWVRSMVREEWTGEVFDKEVRENEHQWAFPLLNIALLCVSRFQETRPTTLDILQKIEEVMDQHEQYQERFASKCCSSGSNRDECCSLHKIIPETWDSPGSNY 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00349 606 SUPERFAMILY Protein kinase-like (PK-like) 308 560 IPR011009 -
Vimu1g00349 606 Coils Coil 133 153 - -
Vimu1g00349 606 SUPERFAMILY L domain-like 59 166 - -
Vimu1g00349 606 MobiDBLite consensus disorder prediction 187 219 - -
Vimu1g00349 606 ProSiteProfiles Protein kinase domain profile. 301 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00349 606 PANTHER OS05G0588300 PROTEIN 12 569 - -
Vimu1g00349 606 Gene3D Transferase(Phosphotransferase) domain 1 377 585 - -
Vimu1g00349 606 Gene3D Ribonuclease Inhibitor 33 207 IPR032675 -
Vimu1g00349 606 MobiDBLite consensus disorder prediction 198 213 - -
Vimu1g00349 606 Pfam Protein kinase domain 310 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00349 606 Pfam Leucine rich repeat 101 160 IPR001611 GO:0005515
Vimu1g00349 606 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 93 179 - -
Vimu1g00349 606 Gene3D Phosphorylase Kinase; domain 1 266 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00349 Vimu-Chr1 2054919 2057396 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00349 12 563 Receptor kinase-like Gene Family AT5G53320 34.188 9.03e-78 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu1g00349 Pkinase 1.7e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00349 - - vra:106763201 1126.31