Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00348 ATGCCGTTTGTTAACCCTGACCCTTCAGACAAAGATTCTGAGCCATTTGTCGAGACAGATCCAACTGGTCGCTATGGTAGATACAGTGAGTTGCTTGGTTGTGGTGCTGTGAAAAAAGTGTACCGTGCATTTGATCAGGAAGAAGGAATAGAGGTGGCTTGGAACCAAGTGAAGCTGAGGAATTTCTGTGATGATCCTACCATGGTGGATAGGCTTTACTCTGAAGTGAGGTTGCTCAGAAGCTTGACCGACAAAAACATCATCGCATTTTACAATGTCTGGAGGGATGACCAGCGTAACACTCTGAATTTCATCACTGAGGTTTGTACCAGTGGTGATTTGAGGGAGTATAGGAAGAGGCACAGGCATGTTTCCATGAAGGCCCTCAAGAAGTGGTCTAAGCAGATCTTGAAAGGGCTGAATTATCTGCACTTGCATGATCCCTGCATCATTCACAGAGATCTCAACTGCAGCAATGTGTTTGTCAATGGAAATACTGGCCAGGTTAAGATTGGTGACTTGGGTTTGGCAGCAATTGTGGGCAGGAGCCATTGTGCTCACACGATTCTTGGGACACCAGAATTCATGGCTCCGGAGTTATATGATGAAGACTACACTGAGTTGGTGGACATTTATTCATTTGGGATGTGTTTGCTGGAAATGGTGACACTGGAGATTCCTTACAGTGAATGTGACAATGTTGCAAAGATATACAAGAAGGTGTGTTCTGGAGTTAGACCTGCAGCCCTGAACAAGGTGAAAGATCCAGAGGTGAAGGCCTTCATTGAGAAGTGCCTTGCTCAGCCAAGAGCAAGACCTTCTGCAGCTGACCTTCTCAGAGATCCCTTCTTTGATGAGATTGTTGATGATGACGAAAATGATGACTGCTCTTCTTCTCACCAGTAA 906 0.4536 MPFVNPDPSDKDSEPFVETDPTGRYGRYSELLGCGAVKKVYRAFDQEEGIEVAWNQVKLRNFCDDPTMVDRLYSEVRLLRSLTDKNIIAFYNVWRDDQRNTLNFITEVCTSGDLREYRKRHRHVSMKALKKWSKQILKGLNYLHLHDPCIIHRDLNCSNVFVNGNTGQVKIGDLGLAAIVGRSHCAHTILGTPEFMAPELYDEDYTELVDIYSFGMCLLEMVTLEIPYSECDNVAKIYKKVCSGVRPAALNKVKDPEVKAFIEKCLAQPRARPSAADLLRDPFFDEIVDDDENDDCSSSHQ 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00348 301 SUPERFAMILY Protein kinase-like (PK-like) 20 290 IPR011009 -
Vimu1g00348 301 FunFam Probable serine/threonine-protein kinase WNK1 10 107 - -
Vimu1g00348 301 ProSiteProfiles Protein kinase domain profile. 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00348 301 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 11 287 - -
Vimu1g00348 301 CDD STKc_WNK 24 284 - -
Vimu1g00348 301 Gene3D Transferase(Phosphotransferase) domain 1 109 290 - -
Vimu1g00348 301 Gene3D Phosphorylase Kinase; domain 1 10 107 - -
Vimu1g00348 301 MobiDBLite consensus disorder prediction 1 22 - -
Vimu1g00348 301 FunFam probable serine/threonine-protein kinase WNK9 109 290 - -
Vimu1g00348 301 Pfam Protein kinase domain 29 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00348 Vimu-Chr1 2049478 2051073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00348 5 288 MAP Kinase Kinase Kinase AT5G55560 79.930 2.31e-178 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vimu1g00348 Pkinase 7.4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00348 K08867 - gmx:100786910 564.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00348 1 2049478 2051073 Vimu1g00348 1 2049478 2051073 ECH
Vimu2g02427 2 19958928 19960255 Vimu1g00348 1 2049478 2051073 PCT