Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00342 ATGCAAATGTCTCAAAAACATAATATGTCCTACGAGGCTGTCCAAAATCTTGGGTCATGCTGCTTCCTACAAAGTGAGAACCTAGACTACTATTCATCCTCTGATAACAGTAGTCATGCAACCTACCCTTCTGTTCGAACTTTAGAACAATATTGCACCCTGGAATCTTCTACAAAGAACAGTTTTCCTTCCCTAAATTCCCCAACTACTGTCAGCTTCTCACCTAACCATAGCCCACTCTCAAAGCTACAACCAAAATCATATGTGTTGAGTTCACATAGTTCTCTTGAAATTACTAATGACTCAATAGAAAATGAATCATGTTTGACGCATAATGACAATGAGCTGAGGCACAAGATAAGAGAGCTTGAAAGTGCTATGTTGGGACATGATGCAGATATTCTGGATATGTATGATACTGTAATTCCGGAGCAATCTGATTCATTTTTGCTAGAGGCAGAAAGGTGGAAGAAAATGATGGAGATGATATCTAGAGGGGATTTGCAAGAGATGCTTTGTGCATGTGCAATAGCAGTGGCAGGAAATGATATGGAGACAACTGAATGGCTGATGTCAGAGTTACGCAAAATGGTCTCAGTTTCTGGCAACCCAATCCAACGATTGGGGGCATACATGTTGGAGGCTCTTGTTGCAAGACTGGCCTCTTCAGGAAGCACAATCTACAAAGCCTTGAAATGTAAAGAGCCTACTGGTAGGGAACTCCTTTCACACATGCACCTACTCTATGAAATCTGCCCATATCTCAAATTTGGTTACATGTCTGCAAATGGAGCTATTGCTGAAGTCATGAAGGGGGAAACTGAAGTCCACATAATTGATTTTCAGATCAACCAGGGAATACAATGGGTGAGCCTAATCCAAGCTCTTGCTGGCAGACATGGAGGACCCCCCAAGATCAGAATAACAGGTTTTGATGACTCCACTTCAGCTTATGCCAGGGAAGGAGGTCTTGAAATTGTGGGAGAAAGGTTGTCAGCACTTGCACAATCATATAATGTACCCTTTGAGTTCCATGCCTTAGAAGTTGCTCCCACTGAGGTTGAAATTAAAGACCTTGAACTTCGACCTGGTGAAGCTATTGCTGTGAATTTTGCCATGATGCTGCACCATCTTCCAGATGAAAGTGTGGATGGTAAGAACCATCGTGGCCGGTTGTTGAGACTGGCAAAGTGTTTGTCTCCAAAGATCGTGACACTAGTTGAGCAAGAATCACATACCAGCAACCTCCCATTCTTCCCCCGTTTTGTTGAGACAATGAACTACTACTTGGCAATTTTCGAGTCAATTGATGTTGCTCTTCCAAGGGAGAACAAAGAAAGGATTAACGTGGAACAGCACTGTTTGGCTCGAGAAGTTGTCAACTTAGTAGCATGTGAAGGGGCAGAAAGAGTGGAACGTCACGAGCTTCTCAAGAACTGGAGATCACGTTTCACCATGGCTGGATTCTCACCATATCCATTGAACTCCTTTATTACCAGTTCGATTAAAAATCTTCAGCAAAGCTACCAAGGACATTACACTCTAGAAGAGAGAGATGGAGCACTATGTCTTGGTTGGATGAATCAAGCTCTTATTACTTCTTGTGCTTGGAGGTGA 1617 0.4273 MQMSQKHNMSYEAVQNLGSCCFLQSENLDYYSSSDNSSHATYPSVRTLEQYCTLESSTKNSFPSLNSPTTVSFSPNHSPLSKLQPKSYVLSSHSSLEITNDSIENESCLTHNDNELRHKIRELESAMLGHDADILDMYDTVIPEQSDSFLLEAERWKKMMEMISRGDLQEMLCACAIAVAGNDMETTEWLMSELRKMVSVSGNPIQRLGAYMLEALVARLASSGSTIYKALKCKEPTGRELLSHMHLLYEICPYLKFGYMSANGAIAEVMKGETEVHIIDFQINQGIQWVSLIQALAGRHGGPPKIRITGFDDSTSAYAREGGLEIVGERLSALAQSYNVPFEFHALEVAPTEVEIKDLELRPGEAIAVNFAMMLHHLPDESVDGKNHRGRLLRLAKCLSPKIVTLVEQESHTSNLPFFPRFVETMNYYLAIFESIDVALPRENKERINVEQHCLAREVVNLVACEGAERVERHELLKNWRSRFTMAGFSPYPLNSFITSSIKNLQQSYQGHYTLEERDGALCLGWMNQALITSCAWR 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00342 538 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 116 532 IPR005202 -
Vimu1g00342 538 ProSiteProfiles GRAS family profile. 159 538 IPR005202 -
Vimu1g00342 538 Pfam GRAS domain family 169 538 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00342 Vimu-Chr1 2019001 2020617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00342 44 538 GRAS Transcription Factor Family AT1G50600 59.281 0.0 584
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu1g00342 GRAS 6.1e-130 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00342 - - gmx:100779977 947.577
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00342 1 2019001 2020617 Vimu1g00342 1 2019001 2020617 ECH
Vimu2g02423 2 19904737 19908856 Vimu1g00342 1 2019001 2020617 PCT