Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00340 ATGGCTGCTTCTGTGTCTCTCTATCCCTATAAACCCCTGCTATACTTTTCGACTCCTTCGTGTTTTCAGTCTCAATTTCGGAACTTGGAGAGAGAGCATTTGGGTTCTGCAAGGTTGAAGAGTTTAGTGAAACTTGCAGCACATTCAAATCCGAAAATTCTCAAGACCAACAGGAAGTCAAAGTATGGAGAGGCACTGTCGCTGTACGATAGTGATGAAGACGATGAAGAAACTGACGAGGAAGAGGACGACGAAGATGATGATGATTGGCTTTCTGATGAGGAATTTGCTGAGCCTGCTAAATTTGATGTTAGGAACAAGAGATTGAAGTCGAAGACAGTTAAAGGAAAGGATAAAGAGCAGGAGTGGGAGTGGGGTTTGAGATCTTTGGACAACGAACAGAGCATTAGATTGCCTAGAAGTGAGAGAGTGGCATCCTTACAACGAAATGAGAGTGGAAAGGTTAGTAGAAATGTAAAGAACAAAAAATATCCGCAGTTGTCCGATGAGATTCCTTTAGATTTGAAATGGTTACCACTTCTTGATTACTTGAGCACCTTTGGAATGAAGGAGTCACACTTTGTCCAAATATATGAGAGGCACATGCAAGCACTTCAAATTAATGTTGGCTCTGCACAGGAAAGGTTAGAATACTTGATGAGTGTTGGTGTTAAACATAGAGATGTAAGAAGAATCCTTTTGAGGCAGCCACAAATTCTTGAGTATACAGTGGAGAACAATTTGAAGTCTCGTGTTGCATTCTTGAGGGACCTGGGGATACCGAATTCTAGAATGGGGCAAATCATTGCTGCTGCTCCGTCTTTGTTTTCTTACAGTGTTGAGAATTCATTAAAACCTACAGTTAGATATTTAGTTGAGGAAGTAGGCATCAAGGAAAAAGATTTGGGTAAGGTCATTCAGCTTAGTCCCCAAATTCTTGTGCAAAGAATTGACATTTCATGGAATATGCGTTATATGTTTCTTACCAAGGAGTTGGGTGCACCCAGGGATAGCATTGTGAAGATGGTGACAAAACATCCCCAACTTCTCCATTACAGCATAGATGATGGATTACTTCCAAGAATAAATTTCTTAAGGAGCATAGGAATGAAAAATTCAGATATCTTGAAAGTATTGACTAGCCTTACGCAGGTGCTATCTCTGTCCTTGGAGGAAAATCTAAAGCCCAAATATTTGTACTTGGTAAATGAACTTAACAATGAGGTGCAATCCTTGACCAAGTACCCAATGTATCTTAGTTTATCCTTGGACCAGAGAATTCGTCCTCGTCATAGGTTCTTAGTTTCCCTAAAGAAAGCTCCAAAAGGACCATTTCCCCTTGGATCTCTTGTACCAACTGATGAATGTTTTTGCGAACAGTGGGCTGGGACAAGTTTGGATAAATATTTGGCATTCCGTCAGAGATTATTACTTCAAAAGTTTGCTGAGAAATATGAAAGAAAAATGTGA 1470 0.4007 MAASVSLYPYKPLLYFSTPSCFQSQFRNLEREHLGSARLKSLVKLAAHSNPKILKTNRKSKYGEALSLYDSDEDDEETDEEEDDEDDDDWLSDEEFAEPAKFDVRNKRLKSKTVKGKDKEQEWEWGLRSLDNEQSIRLPRSERVASLQRNESGKVSRNVKNKKYPQLSDEIPLDLKWLPLLDYLSTFGMKESHFVQIYERHMQALQINVGSAQERLEYLMSVGVKHRDVRRILLRQPQILEYTVENNLKSRVAFLRDLGIPNSRMGQIIAAAPSLFSYSVENSLKPTVRYLVEEVGIKEKDLGKVIQLSPQILVQRIDISWNMRYMFLTKELGAPRDSIVKMVTKHPQLLHYSIDDGLLPRINFLRSIGMKNSDILKVLTSLTQVLSLSLEENLKPKYLYLVNELNNEVQSLTKYPMYLSLSLDQRIRPRHRFLVSLKKAPKGPFPLGSLVPTDECFCEQWAGTSLDKYLAFRQRLLLQKFAEKYERKM 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00340 489 Pfam mTERF 181 436 IPR003690 GO:0003690|GO:0006355
Vimu1g00340 489 PANTHER CGI-12 PROTEIN-RELATED 177 461 IPR003690 GO:0003690|GO:0006355
Vimu1g00340 489 Gene3D Transcription termination factor 3, mitochondrial 239 476 IPR038538 -
Vimu1g00340 489 SMART mt_12 409 440 IPR003690 GO:0003690|GO:0006355
Vimu1g00340 489 SMART mt_12 266 298 IPR003690 GO:0003690|GO:0006355
Vimu1g00340 489 SMART mt_12 303 335 IPR003690 GO:0003690|GO:0006355
Vimu1g00340 489 SMART mt_12 340 371 IPR003690 GO:0003690|GO:0006355
Vimu1g00340 489 SMART mt_12 376 408 IPR003690 GO:0003690|GO:0006355
Vimu1g00340 489 SMART mt_12 230 261 IPR003690 GO:0003690|GO:0006355
Vimu1g00340 489 SMART mt_12 195 225 IPR003690 GO:0003690|GO:0006355
Vimu1g00340 489 MobiDBLite consensus disorder prediction 69 92 - -
Vimu1g00340 489 Coils Coil 195 215 - -
Vimu1g00340 489 MobiDBLite consensus disorder prediction 65 92 - -
Vimu1g00340 489 FunFam Transcription termination factor MTERF9, chloroplastic 241 476 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu1g00340 mTERF 2.3e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00340 K15031 - gmx:102660933 816.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00340 1 2009486 2014923 Vimu1g00340 1 2009486 2014923 ECH