Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00339 ATGGATATTTCTCACTGTACAAGGATTGTCTTTGATAAAATTCATAAATTTGAGCCAGAGCATGCAAGAAAGATAATTGGTTATCTCTTACTACAAGACCATGGTGAACTAGAAATGGCAAAATTAGCTTCTTACCCCGACTATTACATCCGTGAAGTGGCATTTCAGGCCAAAAGGGAGCTTCTAAAATTGACTGCAAAACCAGATATGCTTCCAATTTCACGTATGGTCAACCCTCAACAAGGTTATAGCCATTTTCCTCGAACTCCTACTACACCAAACTTTCAGGTTCCTCCTCTCTATTGGGATCCACAACCTGGCAATATCAATCCAGAGTTTATGGCAATGAATTACATGGATTCTGTCATTGAGCTTCAGAAGCAGACACAATTGTGCAGTTTGGAGAATCATATCGATGCTGTAAAGACTGGGACGGTAGGGGTAGGGGTTGCCAACGATTACTATAGAGATGCTTCTGCTGCCAATTTGGGTCCCAAAGCTGGGAAGAGGTTTTCTGAATATCCAATGAAAGTTTGTCACTATTTCAACAAAGGATTCTGCAAACATGGAAATAACTGCAGATTCTATCATGGGGAAGTTGTCCCTGAGAATTTATCTCAGATGTATGGAAGTGATGCTAGTGGTGAGGATCAGGTGATCTCCCCAGGGTCATTAGCACAGCTAGAGAAAGAAATTATTGAGCTTCTAAGATCTAGGGATGATGCAATATCCATTGCTTCTCTGCCAATGGCGTACTATGATAGATATAAGAAGGTACTGCAAGCAGATGGTTATTTAACTGAGAGTCAAAGACACGGGAAGTCTGGCTATAGTTTGACAAAGCTTCTTGCGCGACTGAAAAATAGTATTAGGCTAATAGTGAGACCTCATGGGCAGCATTCAGTGACTCTAGCAGAAGATGCTCCCACAGAAATGAAGAAGAGAGAGTTTCCTCGAAATATCAGTGCTTCACGACAGATATATCTGACATTCCCGGCTGACAGCACTTTCACAGAGGATGATGTCTCAAACTACTTCAAAATTCCAAACCAGCAGAGAAGGATGTTTGGATTTGTGACATTTGCTCATTCAGAAACGGTCAAAACTGTTTTGGATAAAGGGAATCCTCATTGTGTTCAGGGTTCACGGGTTCTTGCAAAACCTTACCGGGAGAAAGCAAAGATTAATGAAAGGAGGCAGCTGCAAGAGCAAGAACAGGCCCTGGAAAATGAGAGGAGAAGCCTTGCACAATTGCAGTTTTCCTCAAAACCTTTATCCAGCTCACCTCATTTTGGTTTCTCCTTGGACGAGACAAAAGTTTCAGATGATCACTTCAATCTTCAGCCACCAGAAGAATCTTTCCGTTTTCCACTGCATGCCAAATCCATACATAGAGACGACAATTTCTCTGATGAGGAAAGGTCTCAACCTCCCAGACAGTCCATTCGCGTTTCCAATAGATAG 1464 0.4201 MDISHCTRIVFDKIHKFEPEHARKIIGYLLLQDHGELEMAKLASYPDYYIREVAFQAKRELLKLTAKPDMLPISRMVNPQQGYSHFPRTPTTPNFQVPPLYWDPQPGNINPEFMAMNYMDSVIELQKQTQLCSLENHIDAVKTGTVGVGVANDYYRDASAANLGPKAGKRFSEYPMKVCHYFNKGFCKHGNNCRFYHGEVVPENLSQMYGSDASGEDQVISPGSLAQLEKEIIELLRSRDDAISIASLPMAYYDRYKKVLQADGYLTESQRHGKSGYSLTKLLARLKNSIRLIVRPHGQHSVTLAEDAPTEMKKREFPRNISASRQIYLTFPADSTFTEDDVSNYFKIPNQQRRMFGFVTFAHSETVKTVLDKGNPHCVQGSRVLAKPYREKAKINERRQLQEQEQALENERRSLAQLQFSSKPLSSSPHFGFSLDETKVSDDHFNLQPPEESFRFPLHAKSIHRDDNFSDEERSQPPRQSIRVSNR 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00339 487 Coils Coil 391 421 - -
Vimu1g00339 487 MobiDBLite consensus disorder prediction 442 487 - -
Vimu1g00339 487 ProSiteProfiles Zinc finger C3H1-type profile. 173 200 IPR000571 GO:0046872
Vimu1g00339 487 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 412 - -
Vimu1g00339 487 ProSiteProfiles OST-type HTH domain profile. 224 306 IPR025605 -
Vimu1g00339 487 Pfam OST-HTH/LOTUS domain 224 302 IPR025605 -
Vimu1g00339 487 SMART c3hfinal6 173 199 IPR000571 GO:0046872
Vimu1g00339 487 MobiDBLite consensus disorder prediction 457 478 - -
Vimu1g00339 487 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 175 199 IPR000571 GO:0046872
Vimu1g00339 487 SUPERFAMILY RNA-binding domain, RBD 336 400 IPR035979 GO:0003676
Vimu1g00339 487 Gene3D - 169 232 - -
Vimu1g00339 487 SUPERFAMILY CCCH zinc finger 175 198 IPR036855 GO:0046872
Vimu1g00339 487 Coils Coil 225 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00339 Vimu-Chr1 2004858 2008346 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu1g00339 OST-HTH 5.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00339 - - gmx:100818984 704.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00339 1 2004858 2008346 Vimu1g00339 1 2004858 2008346 ECH
Vimu2g02422 2 19856535 19858991 Vimu1g00339 1 2004858 2008346 PCT