Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00324 ATGCGTGTTCGGCATGCTCCACATCTTCCACTTGTGTTGTGTGGTCTTACGTGCAAATTTCATGGAGGACTGAAAACTGGTATTGTTGGGAGAACAGGAAGTGGTAAATCCACACTCATACAAACGCTTTTCCGAATTGTTGAGCCTGCTGTTGGAAAAGTTATGATTGACAACATCAACATCTGTTCCATTGGACTTCATGATTTGAGGTCTAGACTAAGCATTATTCCTCAGGATCCAACAATGTTTGAAGGGACAGTAAGAAATAATCTGGACCCCCTGGAAGAACACACTGATGAGCATTTGGGAGGTGGGTTGGTTTTATATGGGAACACTATGTTCTGTTCAAAAGATTATACTTGTTAA 366 0.4126 MRVRHAPHLPLVLCGLTCKFHGGLKTGIVGRTGSGKSTLIQTLFRIVEPAVGKVMIDNINICSIGLHDLRSRLSIIPQDPTMFEGTVRNNLDPLEEHTDEHLGGGLVLYGNTMFCSKDYTC 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00324 121 Pfam ABC transporter 16 97 IPR003439 GO:0005524
Vimu1g00324 121 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 2 102 - -
Vimu1g00324 121 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 100 IPR027417 -
Vimu1g00324 121 Gene3D - 1 112 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00324 Vimu-Chr1 1921494 1921991 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00324 16 91 Calmodulin-binding Proteins AT2G36910 35.526 4.88e-12 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00324 - K05666 vun:114195183 191.43