Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00315 ATGGGGTTGGATCTTCACATTTCCTTATCTACAATCCTTCCTTTCTTCATCTTAGTGTTGATGGTTATCAACATATTTTGGAGATCAAAAACCAGGAACTCAAACTCTAAGTTGCCACCAGGGCCAAGGAAGCTACCTCTCATAGGAAACATACACCAAATTGGAAGTCAGACTCATAAGTCCTTAGCAACATTGGCACGCCAACATGGTCCACTCATGTATATGCAGCTTGGTGAACTTTGCTGCATAGTTGTATCTTCAGCCGAAATGGCCAAAGAAGTGATGAACACGCATGATATCATCTTTGCAAACAAGCCTAGTGTGCTTGCTGCTGATGTTATCACTTATGGCTCTAAGGGCATGACCTCCAGCTCCTATGGATCTTATTGGAGGCAGATGAGAAAGATTTGCACAATGGAACTGCTAACACAAAAGCGTGTTGAATCCTTCAGATCCATCAGGCTACAAGAGTTGTCAAATTTTGTCAAGGAGATATCTTTAAGTGAAGGGTCGCCTGTTAATCTCACTGAGAAGATGAATTCTTTGTCATACGGACTTATATCTCGGATTCTTTTTGGTAAAAAATCTGAAGACCAAGAGGCTTATGAGGAACATATGAAGGGTGTCGATGAGACAGTTGGAGGGTTTTCTGTCTCTGATCTGTATCCTTCTATTGGACTTCTTCAAATCATTACTGGGATTGGGGCTAGAGTTGAGAAGATTCATCAAGGAATGGATAGGGTACTTCAGAACATTGTTAGCGATCACAGAGACAAAACGTTGGGGGCTTTTGGTGAAGAAGATAGGGAAGATCTAGTTGATGTTCTTATAAGGCTTCAGAAAAATGGTGATCTCGAACACCCCCTATCAGACACTGTTGTCAAAGCAACCCTTTTGGACATGTTCAGTGCTGGAAGCGACACTTCATCAACAACTATGGATTGGATGATGTCAGAGCTGGTGAAGAACCCTGAGGTGATGGAGAAAGTGCAAAGTGAGGTAAGAAGAATCTTTGATGGAAAAGGGTATGTGGATGAAACAGATATTCATGAGCTGAAGTACTTGAGAGCTGTTATCAAAGAAACATTGCGTCTGCATCCACCTGCTCCATTGCTGCTAAGGGAATGCAGTGAGAAATTTGAGATCAATGGGTATGAGATACCAGCCAAAAGCAAAGTGATTGTCAATGCATGGGCCATTGGGAGGGATCCTAATCATTGGAATGAAGCTGAGAAATTCTATCCTGAAAGGTTCCTTGAAAGCTCGATTGATTACAAAGGTGGTGAGTTTCAGTTCATTCCATTTGGAGCTGGAAGGAGGATATGCCCTGGAATTAATCTTGGCATTGTCAATGTTGAATTTTCACTTGCAAATTTGCTTTTCCATTTTGATTGGAAGCTGCCTCAAGTGATGAATAGGCCTCAAGACCTTGATATGACTGAATCCTTTGGGTTGACAGTTAAAAGGAAACATGATTTGGTGTTGATTCCTATCTCTCACCACTCAGCTAAAAACTAA 1518 0.4157 MGLDLHISLSTILPFFILVLMVINIFWRSKTRNSNSKLPPGPRKLPLIGNIHQIGSQTHKSLATLARQHGPLMYMQLGELCCIVVSSAEMAKEVMNTHDIIFANKPSVLAADVITYGSKGMTSSSYGSYWRQMRKICTMELLTQKRVESFRSIRLQELSNFVKEISLSEGSPVNLTEKMNSLSYGLISRILFGKKSEDQEAYEEHMKGVDETVGGFSVSDLYPSIGLLQIITGIGARVEKIHQGMDRVLQNIVSDHRDKTLGAFGEEDREDLVDVLIRLQKNGDLEHPLSDTVVKATLLDMFSAGSDTSSTTMDWMMSELVKNPEVMEKVQSEVRRIFDGKGYVDETDIHELKYLRAVIKETLRLHPPAPLLLRECSEKFEINGYEIPAKSKVIVNAWAIGRDPNHWNEAEKFYPERFLESSIDYKGGEFQFIPFGAGRRICPGINLGIVNVEFSLANLLFHFDWKLPQVMNRPQDLDMTESFGLTVKRKHDLVLIPISHHSAKN 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00315 505 CDD CYP71-like 68 493 - -
Vimu1g00315 505 Gene3D Cytochrome P450 24 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00315 505 FunFam Cytochrome P450 99A2 28 498 - -
Vimu1g00315 505 PRINTS E-class P450 group I signature 356 374 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00315 505 PRINTS E-class P450 group I signature 432 442 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00315 505 PRINTS E-class P450 group I signature 66 85 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00315 505 PRINTS E-class P450 group I signature 293 310 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00315 505 PRINTS E-class P450 group I signature 313 339 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00315 505 PRINTS E-class P450 group I signature 396 420 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00315 505 PRINTS E-class P450 group I signature 182 200 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00315 505 PRINTS E-class P450 group I signature 90 111 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00315 505 PRINTS E-class P450 group I signature 442 465 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00315 505 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 435 444 IPR017972 GO:0005506|GO:0016705
Vimu1g00315 505 SUPERFAMILY Cytochrome P450 37 497 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00315 505 Pfam Cytochrome P450 39 485 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00315 505 PRINTS P450 superfamily signature 433 442 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00315 505 PRINTS P450 superfamily signature 357 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00315 505 PRINTS P450 superfamily signature 304 321 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g00315 505 PANTHER CYTOCHROME P450 71B11-RELATED 22 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00315 Vimu-Chr1 1874340 1876150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00315 30 496 Cytochrome P450 AT3G48310 39.872 6.22e-132 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00315 - - gmx:100776770 795.808