Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00310 ATGGTGTTGTTGTTGAAGTGTGTTGGTGATACTGATAGTGATCATGCTGGAAACGTGATTACGTGGGATGATTTCATGGTGGATGAAAAGGACACAACATCCAACGTTGGTGGTCGAGTTATTGTGGTCGATCAAAGTGGTAACGGAGATTCAACAACGGTTCAAGCAGCTGTAGATATGGTTCCGCAAAACAACACCCAGAGGGTCAAGATATACATATATCCTGGAATATATAGAGAAAGAGTGCATGTGCCGAAAAGCAAGCCGTTCATTTCATTAATAGGTAAACCTAACATAACTATGAATGCAAATATAGCGGCTATAGGTAATGGCATTGGCATAGTTATTATCACAAACAGTACAAAGGCATCAGACAAAGACTCCAACGGCCAAGAAATGGGCACAATTAGTACAGCAACCGTATGGGTACAATCTGATTTTTTCTGCGCAACAGCTCTTACATTTCAGAATTTGGTAGATAAAGAAGCAGATAAACGTCAAGCAGTAGCATTGCGTGTAGACGGTGATAAAGCTGTATTCTATGGAGTTAGGCTTGTGGGGGAGCAAGACACCCTCCTTGATAACACAGGAATCCATTATTTCTATAGAAGTTACATTCAAGGATCTGTTGATTTTATATTTGGCAATGCTAAATCGTTGTTTCATGAGTGTGTTGTATACTCTGTAGCTGAGTTTTGGGGAGCAATTGCAGCTCATCACAGAGACTCGGAAGATGAAGATACAGGATTTTCATTTGTTAATTGCACAATAAAAGGAAGTGGTAGTGTGTTTCTTGGGAGAGCATGGGGGAACTATGCAACAACAATCTATTCAAACTGTGACATGGATGATGTTATTAATCCCTTGGGATGGAGCGATTGGGGTGATCCATCAAGACAAGGGACTGCAATGTTTGGAGAGTATGAGTGTTCAGGAAAAGGATCAAACAGAAGTGAGAGGGTGGAATGGTCGAAAGCTCTAAGCAGAGAAGAAGCTGAGCCTTTTCTGAGCAGAGACTACATATATGGAGATGGATGGCTTAGACTATAG 1050 0.4114 MVLLLKCVGDTDSDHAGNVITWDDFMVDEKDTTSNVGGRVIVVDQSGNGDSTTVQAAVDMVPQNNTQRVKIYIYPGIYRERVHVPKSKPFISLIGKPNITMNANIAAIGNGIGIVIITNSTKASDKDSNGQEMGTISTATVWVQSDFFCATALTFQNLVDKEADKRQAVALRVDGDKAVFYGVRLVGEQDTLLDNTGIHYFYRSYIQGSVDFIFGNAKSLFHECVVYSVAEFWGAIAAHHRDSEDEDTGFSFVNCTIKGSGSVFLGRAWGNYATTIYSNCDMDDVINPLGWSDWGDPSRQGTAMFGEYECSGKGSNRSERVEWSKALSREEAEPFLSRDYIYGDGWLRL 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00310 349 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 32 348 - -
Vimu1g00310 349 FunFam Pectinesterase 36 349 - -
Vimu1g00310 349 ProSitePatterns Pectinesterase signature 2. 206 215 IPR033131 -
Vimu1g00310 349 Gene3D - 39 349 IPR012334 -
Vimu1g00310 349 Pfam Pectinesterase 41 344 IPR000070 GO:0030599|GO:0042545
Vimu1g00310 349 SUPERFAMILY Pectin lyase-like 38 347 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00310 Vimu-Chr1 1856454 1858244 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00310 39 300 Carbohydrate Esterase AT5G55590 62.121 4.34e-115 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00310 K01051 - gmx:100775690 598.201