Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00309 ATGCAGTTGGTGTCTTCCGGAGTTATGTTCTTGTTTGTGACGGTTTTCTTGACGTGGGTTCATGTGGTTTTAGCAGAAGGTGAAAATGGCCATGGTGGTATTAGGAACTACATCAGTTGGGAAGATTTGCAGGTGGATGAGCAAAGGTTAACCTTAAAGCGCCATGATGATGTTAGAGTTATTATTGTTAACAAATATGGTTGGGGGCACTCCAAAACTGTTCAAGGTGCCGTGGATATGGTTCCTGATAATAACGAACATAGGGTGAAAATTTACATTTATCCAGGAGTTTACAGAGAGAAAGTGCGTGTGCCTGTGAGCAAGCCTTATGTATCATTCATAGGGAAAAGAAACCAAACAGCAACTCCTGTTATTACTTGGAACAGTAAGTCATCTGATAAAGGCACAAATGGCCAAGCAATGGGCACCTTTGATACAGCGACAGTTGGAGTGGACTCAGATTATTTCTGTGCAAGTGGGGTCACTTTTGAGAATTCAGTGATTGCAACGGCTGGTGTGAAAGGGATGCAAGGAGTGGCACTCAGAGTGAACAGTGCAAGAGCCATGTTCTATCAAGTGAAGATTAAGGGAGCACAGGACAGTCTCTTAGACAACACAGGAAGCCATTACTTCTTAAAGTGCCACATCCTAGGAAAAGTTGATTTTATCTTTGGAAATGCAAAATCATTGTATGAGTCAATAGCAGACAACTTTGGAGCGATAGCAGCACATCATAGGAATTCAGCAACTGAAGACACAGGTTTTTCTTTTGTGGGGTGCAGTATCAGAGGAAGTGGCAGAGTATACCTTGGCAGAGCATGGGGGAACTACTCTAGAATTATATACTCCAAATGTACTATGGATGACATTATTATTCCTGAAGGGTGGTCAGATTGGAATCACTCGGATAGAAAGAAGACTGCAGTGTTTGGGGAGTATGAATGCAATGGAAAAGGAGCAGATAGAAGCAAAAGAACAGCTTGGTCAAAATCATTCAGCTATGATGAAGCAGTGCCTTTCCTTCAGAAGAGTTTCATACATGGAGACCAGTGGCTCAGACTATAG 1065 0.4235 MQLVSSGVMFLFVTVFLTWVHVVLAEGENGHGGIRNYISWEDLQVDEQRLTLKRHDDVRVIIVNKYGWGHSKTVQGAVDMVPDNNEHRVKIYIYPGVYREKVRVPVSKPYVSFIGKRNQTATPVITWNSKSSDKGTNGQAMGTFDTATVGVDSDYFCASGVTFENSVIATAGVKGMQGVALRVNSARAMFYQVKIKGAQDSLLDNTGSHYFLKCHILGKVDFIFGNAKSLYESIADNFGAIAAHHRNSATEDTGFSFVGCSIRGSGRVYLGRAWGNYSRIIYSKCTMDDIIIPEGWSDWNHSDRKKTAVFGEYECNGKGADRSKRTAWSKSFSYDEAVPFLQKSFIHGDQWLRL 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00309 354 Pfam Pectinesterase 61 349 IPR000070 GO:0030599|GO:0042545
Vimu1g00309 354 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 51 353 - -
Vimu1g00309 354 FunFam Pectinesterase 56 354 - -
Vimu1g00309 354 SUPERFAMILY Pectin lyase-like 60 352 IPR011050 -
Vimu1g00309 354 Gene3D - 57 354 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00309 Vimu-Chr1 1851643 1853388 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00309 3 306 Carbohydrate Esterase AT5G55590 50.760 1.12e-116 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00309 K01051 - gmx:100813382 551.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00309 1 1851643 1853388 Vimu1g00309 1 1851643 1853388 ECH