Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00304 ATGACCAACAATAATGTAAAGGAGCCCTTGCTGTCAGGGTCTTTGAATGAGACTCAAAAAGCTAAACGGCTGTTAAACAAGAGAAGGTTAAACCGCTCTAGAAGTGCTCCTAGCACAGATCTTGTTCCTTCTGAGACACAATGCAAAGAAACAACTCATCCAACTACATCCATATTTCAGAATTTACATCCAAATTATAAAAGAGTGGCTATCTACCTTGCAGTATATTTAGGTGTAGGTGCTTTAATCTTCTTCCTTGTCAGGGACCAGATCAAGGGGACGAAAACAGATGGAATTCTTGATGCTTTGTACTTTACAATTGTTACAATGACCACTGTTGGATATGGAGATCTTGTGCCAGATAGCCACCTAACAAAACTACTTGCATGTGCCTTTGTTTTCTCTGGGATGGCATTGATCGGACTGACTGTAAGCAAAGCAGCAGATTACTTAGTTGAGAAACAGGAACTTTTGCTAGTTAAAGCTATGCACGTGCACCAAAAAGTTGGTTCAACTGGAATATTAAGGGAGCTCGAGACCAATAAAACAAGATACAAACTTTTTGTAGTCTTTTTCCTCCTTTTGGTTCTCTTCACTGCAGGGACAATTTTTCTGGTGACTGTTGAGAAATTGGATGTTATCGATGCATTCTACTGTGTTTGTTCTACCATCACAACCCTTGGTTATGGGGACAAAAGCTTCTCAACTCAAGCAGGAAGAATATTTGCCGTGTTTTGGATATTGACAGGTACTATTACTTTAGCTCAGTTTTTCCTCTACATTGCTGAGCTAAACACTGAAATCAGACAAAAGGAGCTTGTGAAGTGGGTACTTACAAGGAAAGTGACGAATTTAGATTTGGAGGCTGCTGATCTTGATGAGGATGGAACTGTTGGGGCTGCTGAATTTGTTATCTATAAACTGAAAGAGATGGGGAAGATTAGTCAAGAAGATATATCACTTGTGATGCAGGAGTTTGAACAGCTAGATGTTGATGATTCTGGTACATTGTCACCTTCGGATATAACACTTGCTCAGTCAACTTAG 1047 0.3973 MTNNNVKEPLLSGSLNETQKAKRLLNKRRLNRSRSAPSTDLVPSETQCKETTHPTTSIFQNLHPNYKRVAIYLAVYLGVGALIFFLVRDQIKGTKTDGILDALYFTIVTMTTVGYGDLVPDSHLTKLLACAFVFSGMALIGLTVSKAADYLVEKQELLLVKAMHVHQKVGSTGILRELETNKTRYKLFVVFFLLLVLFTAGTIFLVTVEKLDVIDAFYCVCSTITTLGYGDKSFSTQAGRIFAVFWILTGTITLAQFFLYIAELNTEIRQKELVKWVLTRKVTNLDLEAADLDEDGTVGAAEFVIYKLKEMGKISQEDISLVMQEFEQLDVDDSGTLSPSDITLAQST 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00304 348 Pfam Ion channel 72 152 IPR013099 -
Vimu1g00304 348 Pfam Ion channel 193 265 IPR013099 -
Vimu1g00304 348 Gene3D - 63 157 - -
Vimu1g00304 348 MobiDBLite consensus disorder prediction 27 49 - -
Vimu1g00304 348 PRINTS Two pore domain K+ channel signature 296 305 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vimu1g00304 348 PRINTS Two pore domain K+ channel signature 222 250 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vimu1g00304 348 ProSitePatterns EF-hand calcium-binding domain. 330 342 IPR018247 -
Vimu1g00304 348 Gene3D - 168 278 - -
Vimu1g00304 348 ProSitePatterns EF-hand calcium-binding domain. 291 303 IPR018247 -
Vimu1g00304 348 SUPERFAMILY Voltage-gated potassium channels 179 284 - -
Vimu1g00304 348 FunFam Calcium-activated outward-rectifying potassium channel 1 63 158 - -
Vimu1g00304 348 FunFam Two-pore potassium channel 1 167 275 - -
Vimu1g00304 348 MobiDBLite consensus disorder prediction 31 49 - -
Vimu1g00304 348 SUPERFAMILY Voltage-gated potassium channels 69 160 - -
Vimu1g00304 348 SUPERFAMILY EF-hand 250 344 IPR011992 -
Vimu1g00304 348 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 71 321 IPR003280 GO:0005267|GO:0016020|GO:0071805
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00304 Vimu-Chr1 1833484 1834713 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00304 53 348 Ion Channels AT5G55630 68.687 1.28e-152 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00304 K05389 - gmx:100777388 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00304 1 1833484 1834713 Vimu1g00304 1 1833484 1834713 ECH