Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00298 ATGGCTGACTCGGACAACGACTCGGAGGGAGCGCAGAACGCGGGAAACAGCAGCTTCAGCGAGTTATCGCCTCGGGAACAGGAACGCTTCCTGCCACTCGCCAACGTAACCAGGCTCATGAAAAGGGCTATACCGGCGAACGCCAAGATCTCCAAGGACGCCAAAAAGACCATGCTGGAATGCGTGTCGGAGTTCATAATTTTCATAACCGACGAAGCTTCCGAAAAGTGCCAGCGCCAGAAGCGCAAGACAATCAACGGCGACGACATTCTGTGGGCCATGACCTCCTTAGGATTCGAGGACTACGCCAAGTTTCTCAAAATTTACCTCCAGCGATTCCGCGAGATCGAGGGAGAAAAGACCGTGGCCGCACGAGACAAGGACGCCGCCGCCTCCTCCTCCGTGAGCGGCTACGACTACTCCCCGTCCTCCGCCGCCGCCATGATGCGTCATCTACAAGTAGGAGCTACCTTAGATAATGTAGAAGAGTTGGAGCTGCTAATTTTCGTAGAGGAGAACCAAGGAATCCAGCGTGAAACGGCAACGAGATCATGGATAAAAGTTTTGAAGTCAGTGCTGAGTGGGCGATTAGACAGTCCAAGTCAGAGTGGAACATGTAGCGGATACGAAACCAGCGGTCCAGATCGTTGCTCCATCGTCAAATCCAATGGTCAAAAAGCCCTCCGTGCAAGCACACACTTATCGACTAACAACGCCTTCGGAATCGGCGCTGATTCCATGGCTGACTCGGACAACGACTCGGGAGGAGCGCAGAACGCGGGGAACAGCGGCTTCAGCGAGTTATCGCCTCGGGAACAGGACCGCTTCCTTCCAATCGCCAACGTAAGCAGGATCATGAAAAAGGCTCTGCCGGCGAACGCCAAGATCTCCAAGGACGCCAAAGAGACCGTGCAGGAATGCGTGTCGGAGTTCATAAGTTTCATAACCGGCGAAGCTTCCGACAAGTGCCAGCGGGAGAAGCGCAAGACAATCAACGGCGATGACCTTCTGTGGGCCATGACCACCTTAGGATTCGAGGACTACGTGGAGCCTCTCAAAATTTACCTCCAGCGCTTCCGCGAGATCGAGGGAGAGAAGACCGTGGCCGCACGCGACAAGGACGCCGCCGCCTCCTCCTCCGTGAGCGGCTACGACTACTCCCCGTCCTCCGCCGCCGCCATGATGCATCATCCGGGACACGTCTACGGGTCCCCCGCGTTCCATCAAGTGAGTGCCCCTCCCGTTATGGGTAAGCCTGGACCTGGGCCTGGGCCTGGGCCCGGGCCCAGTTATCCTGCCCCTGGTAGACCCAGATAA 1317 0.5672 MADSDNDSEGAQNAGNSSFSELSPREQERFLPLANVTRLMKRAIPANAKISKDAKKTMLECVSEFIIFITDEASEKCQRQKRKTINGDDILWAMTSLGFEDYAKFLKIYLQRFREIEGEKTVAARDKDAAASSSVSGYDYSPSSAAAMMRHLQVGATLDNVEELELLIFVEENQGIQRETATRSWIKVLKSVLSGRLDSPSQSGTCSGYETSGPDRCSIVKSNGQKALRASTHLSTNNAFGIGADSMADSDNDSGGAQNAGNSGFSELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQRFREIEGEKTVAARDKDAAASSSVSGYDYSPSSAAAMMHHPGHVYGSPAFHQVSAPPVMGKPGPGPGPGPGPSYPAPGRPR 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00298 438 MobiDBLite consensus disorder prediction 416 438 - -
Vimu1g00298 438 PRINTS CCAAT-binding transcription factor subunit A signature 342 360 - -
Vimu1g00298 438 PRINTS CCAAT-binding transcription factor subunit A signature 304 322 - -
Vimu1g00298 438 PRINTS CCAAT-binding transcription factor subunit A signature 323 341 - -
Vimu1g00298 438 SUPERFAMILY Histone-fold 27 129 IPR009072 GO:0046982
Vimu1g00298 438 SUPERFAMILY Histone-fold 273 375 IPR009072 GO:0046982
Vimu1g00298 438 MobiDBLite consensus disorder prediction 1 24 - -
Vimu1g00298 438 ProSitePatterns NF-YB/HAP3 subunit signature. 307 323 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vimu1g00298 438 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 252 375 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vimu1g00298 438 MobiDBLite consensus disorder prediction 245 269 - -
Vimu1g00298 438 MobiDBLite consensus disorder prediction 251 269 - -
Vimu1g00298 438 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 276 340 IPR003958 -
Vimu1g00298 438 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Vimu1g00298 438 MobiDBLite consensus disorder prediction 403 438 - -
Vimu1g00298 438 FunFam Nuclear transcription factor Y subunit B-3 265 387 - -
Vimu1g00298 438 Gene3D Histone, subunit A 265 386 IPR009072 GO:0046982
Vimu1g00298 438 Gene3D Histone, subunit A 19 147 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00298 Vimu-Chr1 1770335 1776036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00298 247 370 CCAAT-HAP3 Transcription Factor Family AT4G14540 86.290 4.01e-73 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vimu1g00298 CBFD_NFYB_HMF 7.4e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00298 K08065 - gmx:100500556 259.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00298 1 1770335 1776036 Vimu1g00298 1 1770335 1776036 ECH
Vimu2g02364 2 19179816 19184153 Vimu1g00298 1 1770335 1776036 PCT