LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu1g00294	ATGGGCACGTGCATGTGCATGGTTGTCTTCTTCATCTTCATGCTCTTCTTGGGCGCTCTGTGTGAGGTGGCAGCCATACGAAACAACGTCGACTTCGACTTCCCTTCTTTCACCCCCGACAACAACAACATCACCCTCCTCGGCGATTCCTTTCTATGGAGCAACGGCGTCGTAAGACTCACAAACGTCGCCTCCACTTCCAGCACCGGCGCCGTCATCTACGCCTACCCCATCCCACTCTTCCACCCTCCAACCGCCACCTTCGCCTCCTTCTCCACCACCTTCACCTTCTCCATCAACAACCTCAACCCCGCCTCCTCCGGCGACGGCCTTGCCTTTTTCCTCTCCCCCAACACCACCTCCACCAATCTCTCCCTCTCCGCTCCACTAGGCCTCCCCTCCTCCTTCGTCGCAGTCGAGTTCGACACGCACTTGGACTCCCACTTCGGCGACCCTAACGAGAACCACGTCGGCTTCGACGTCGATTCCATGAAGTCCCTCAAAACCGGTGACCCCATCTTGCACGGCATCGACCTCAAGAGCGGCAACACCATCATCGCATGGATCGACTACGACGCCGGTCGAACTTCTCTCACCGTTTTCTTGAGCTATTCACTTCCAAAACCCGTGGACCCCGTCCTCTCCGTAAAGTTCAATCTTTCTCAACACTTGAGAAACCCCGTCTACATTGGATTCTCAGCTTCCACTCAAGGAATTACCGAGATTCACCAAATCCAGAGTTGGACCTTTCACAGTGCTTGTGCTCCCGCAAGAACGAGGTTGCACCCTCACAACGTTTCCGTTGTGGGAACTGTACCTATTTCTGGTTCGGGTTCGGGTTCTGGTTCTGGTTCTGTTTCTAGTCCAAGCACTAATTCTACTTTCAAGAAGCATGACAAGAGGGTTGGCGTTGGTGTGGTTGTTGCGGGATCGGTCTCTTTCTTCGTGGTTTTTTCAGTCTTGGGGTATGTTTTTGTTCGGAGATCGAGGGGTGGGAGAGAAGAAAAGTTTGAGAATGGTTTCGTGGCATGTCCTAGGGCGTTCGATTACAAAGAGTTGAAGTCTGCGACAAAAGAGTTTCATCCGAGCAGGATTGTTGGGCACGGATCATTTGGGACGGTGTATAAGGCGTTCTTTATCTCTTCCGGAACCATTGCTGCAGTGAAAAGGTCGCGGCACTCTCACGAAGGGAAGACCGAGTTTCAGGCTGAACTGTCCATCATAGCCGGTTTGCGGCACAAGAATTTGGTTCAGCTGCAAGGTTGGTGTGTTGAGAAGGGAGAGTTATTGCTGGTGTATGAGTTTATGCCCAATGGAAGTTTAGACAAGATGCTTTACAAGGAACCTGAAGTGGGGAGGTTGCTGAGTTGGTCTCACAGGGTGAACATTGCTGTTGGGTTGGCCTCTGTACTGGTTTACCTACACCAAGAGTGTGAGAGGAGAGTGGTTCACAGGGACATTAAGACCGGGAACATATTGCTGGATGGAAACATGAATCCTAGGTTGGGGGATTTTGGATTGGCAAAGCTGATGGATCATGATAAGAGTCCTGTGTCCACTTTGACTGCTGGAACAATGGGGTACCTTGCCCCTGAGTATCTTCAGTATGGAAAGGCCACTGACAAGTCTGATGTTTTCAGCTATGGGGTGGTTGTGCTTGAAGTGGCTTGTGGAAGGAGGCCAATTGAGAGAGAAGGGTCGAAAATGGTGAATCTGATTGAGTGGGTTTGGGGGCTGCATTCTGAAGGGAAGGTGATTGAAGCTGCTGATAAGAGGTTGAATGGGGAATTTGAGGAAGAGGAAATGAGGATGCTTTTGCTCTTGGGATTGAGTTGTGCTAACCCTGATACTGCTGGGAGGCCTTCCATGAGAAGGGTGCTCCAGATTCTGAACCATGAGGCTCCACCACTTACTGTGCCAAAGGTTAAGCCAACACTCACCTTCTCCTCTGCACTTCCCCTTACTATTGAGGACATTGTTTCTGACACTGAAGAAGTGTTCAGTACCAGCAGGTCTGTGTGTGAGGTCAACTTTGACTGA	2040	0.5098	MGTCMCMVVFFIFMLFLGALCEVAAIRNNVDFDFPSFTPDNNNITLLGDSFLWSNGVVRLTNVASTSSTGAVIYAYPIPLFHPPTATFASFSTTFTFSINNLNPASSGDGLAFFLSPNTTSTNLSLSAPLGLPSSFVAVEFDTHLDSHFGDPNENHVGFDVDSMKSLKTGDPILHGIDLKSGNTIIAWIDYDAGRTSLTVFLSYSLPKPVDPVLSVKFNLSQHLRNPVYIGFSASTQGITEIHQIQSWTFHSACAPARTRLHPHNVSVVGTVPISGSGSGSGSGSVSSPSTNSTFKKHDKRVGVGVVVAGSVSFFVVFSVLGYVFVRRSRGGREEKFENGFVACPRAFDYKELKSATKEFHPSRIVGHGSFGTVYKAFFISSGTIAAVKRSRHSHEGKTEFQAELSIIAGLRHKNLVQLQGWCVEKGELLLVYEFMPNGSLDKMLYKEPEVGRLLSWSHRVNIAVGLASVLVYLHQECERRVVHRDIKTGNILLDGNMNPRLGDFGLAKLMDHDKSPVSTLTAGTMGYLAPEYLQYGKATDKSDVFSYGVVVLEVACGRRPIEREGSKMVNLIEWVWGLHSEGKVIEAADKRLNGEFEEEEMRMLLLLGLSCANPDTAGRPSMRRVLQILNHEAPPLTVPKVKPTLTFSSALPLTIEDIVSDTEEVFSTSRSVCEVNFD	679

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu1g00294	679	SMART	serkin_6	360	635	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu1g00294	679	SUPERFAMILY	Protein kinase-like (PK-like)	343	651	IPR011009	-
	Vimu1g00294	679	CDD	lectin_legume_LecRK_Arcelin_ConA	30	252	IPR001220	GO:0030246
	Vimu1g00294	679	MobiDBLite	consensus disorder prediction	276	293	-	-
	Vimu1g00294	679	SUPERFAMILY	Concanavalin A-like lectins/glucanases	31	253	IPR013320	-
	Vimu1g00294	679	MobiDBLite	consensus disorder prediction	276	296	-	-
	Vimu1g00294	679	Gene3D	Phosphorylase Kinase; domain 1	326	435	-	-
	Vimu1g00294	679	Pfam	Protein kinase domain	361	628	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu1g00294	679	ProSiteProfiles	Protein kinase domain profile.	360	635	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu1g00294	679	PANTHER	-	47	635	-	-
	Vimu1g00294	679	Pfam	Legume lectin domain	30	258	IPR001220	GO:0030246
	Vimu1g00294	679	Gene3D	Transferase(Phosphotransferase) domain 1	436	649	-	-
	Vimu1g00294	679	ProSitePatterns	Protein kinases ATP-binding region signature.	366	389	IPR017441	GO:0005524
	Vimu1g00294	679	FunFam	L-type lectin-domain containing receptor kinase VIII.1	436	648	-	-
	Vimu1g00294	679	ProSitePatterns	Legume lectins beta-chain signature.	137	143	IPR019825	-
	Vimu1g00294	679	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	482	494	IPR008271	GO:0004672\|GO:0006468
	Vimu1g00294	679	CDD	STKc_IRAK	366	631	-	-
	Vimu1g00294	679	Gene3D	-	27	254	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu1g00294	Vimu-Chr1	1756135	1758174	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu1g00294	7	665	Receptor kinase-like Gene Family	AT5G55830	56.041	0.0	695

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vimu1g00294		Pkinase	2.5e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu1g00294	-		-	gmx:102668712	895.96