Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00276 ATGATCAAGGTACCAATTCTATTCTTCAAAGTTGGCTATTGGGATGCTTCGATTTCAAGTTCTTTTGATGCAAAGCTGTGCTTCCTTCATCCACAACAAGACTTTAGCATGGTTCCATTTTCTTCAAATTCTGTCACAGAAGATAGAGTGGCTAGTGCTCGAAATAGGCCTCCACGTGTCACCCCTCCTTCCTTCTTGGTTCGGGTGGCCATGAGAATATCTAGAGCAAGATGGTTTACCTTTTTGAGAAGAGTTTTTCATTACCAAAATGGATCAAGGTCCAATCTTGGCTCCAACCCTTTCAATTCTAGCACTTGGATGATGCTGGAGTTTATTGCCTTGGTTGTTCAAATAACTATTACAACATTCACTTTAGCCATTTCCAAAAGGGAGAGACCTATTTGGCCTATGAGGATTTGGATTTCTGGTTATGATATTGGTGTTGTTCTTAATCTGCTGCTACTTTACGGGCGTTATCGTCGAATTTATCTCACGCAAGGCCTTTCTGATATAGAACAGCAGAGAAACAATGAAGAAACAAGGATGTCACACTTGATGAACAGATGTCGGACTTCACTTGAGCTTTTCTTTGCCATATGGTTTGTGATGGGAAATGTTTGGGTTTTTGGCTCACGTTTTGGATCTTTTCAACAAGCTCCAAAACTGCATGTGCTCTGCATCACTCTTCTTGCTTGGAATGCAGTGTGCTACTCTTTCCCTTTTCTACTGTTTCTGCTGCTATGCTGTTTTGTGCCACTCATCAGCACCCTCCTTGGCTACAACATGAATATAGCCTCTTTTGATAAAGGAGCTTCTGATGATCAAATTTCACAGCTTCCAAGCTGGAGACATAAAGAAGGTCGCGCAAAGTTAGAGCTTGGAAATGACTCTGATGGGAGTGAAAAACTGATTGATGAAGACCAAGAATGTTGTATCTGCTTAACCAAGAAAGGGATGGAAGGAAAGGTAATGGAAAAGGAAAATTGCATAAAAGTAAAGCATGTGAATGGAACAGAAGTAGAAATCTCAGGTTTGAAAGTGAATGAGTCTGATTCACCGAGGAGTGAATGCTCATTGAAGAGGTCTTGTAGTGAGAAGAGGGATTGTCTCTGCTCACCCACCACACACGCTGGCTCCTTCAGGTGTCGCCACCACCGTGCTGCTATGCGTCTTACAAACTCTTCTTTGTCTGCAAGGGACTTCAAACCCTCACTCCAACCACAGTGA 1227 0.4238 MIKVPILFFKVGYWDASISSSFDAKLCFLHPQQDFSMVPFSSNSVTEDRVASARNRPPRVTPPSFLVRVAMRISRARWFTFLRRVFHYQNGSRSNLGSNPFNSSTWMMLEFIALVVQITITTFTLAISKRERPIWPMRIWISGYDIGVVLNLLLLYGRYRRIYLTQGLSDIEQQRNNEETRMSHLMNRCRTSLELFFAIWFVMGNVWVFGSRFGSFQQAPKLHVLCITLLAWNAVCYSFPFLLFLLLCCFVPLISTLLGYNMNIASFDKGASDDQISQLPSWRHKEGRAKLELGNDSDGSEKLIDEDQECCICLTKKGMEGKVMEKENCIKVKHVNGTEVEISGLKVNESDSPRSECSLKRSCSEKRDCLCSPTTHAGSFRCRHHRAAMRLTNSSLSARDFKPSLQPQ 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00276 408 Coils Coil 168 188 - -
Vimu1g00276 408 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 38 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00276 Vimu-Chr1 1622954 1627281 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00276 61 285 C3H Transcription Factor Family AT5G55970 75.217 4.61e-121 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00276 - - gmx:100813670 508.064