Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00273 ATGTCTTTAAGCTTGAGGAATCTCTCACCTTCTTCCAAAATCTTCTCCCTCTCTTTGCTTCTTTTATTTCATTGTTGTTACTCCCAGCTTAATGAGCAAGGCCAAGCTCTTTTAGCATGGAAAAACAGTTTAAACAGTTCTGCAGATGCATTAGTATCTTGGAATCCTTCCAGCACAACCCCATGCAATTGGTTTGGGGTGCGCTGCAACTTACAAGGAGAGCTGGTTGAGATAAACCTGACTTCAGTGAACTTGCAAGGCTCGTTACCTTCAAATTTTCAACTTTTCAGGTCCTTGAGGATTCTTGCCCTCCCAGCAGCTAACATCACAGGCAGGATTCCAAAGGAGATTGGAGACTGTAAAGAGCTCATTTTCATTGATCTCAGTGGCAATTTTCTCTTTGGTGAAATCCCAGAAGAAATTTGCAGGCTGAGCAAACTGCAGACTTTAGCTCTGCATACCAACTTTCTTGAAGGCAACATTCCATCCAGCATAGGAAATTTATCGAGTCTGGTGAACTTGACACTCTATGACAACAAACTGAGTGGCGAAATTCCAAAGAGTATTAGCTCATTAACTGAGCTCCAAGTGTTGAGAGTAGGAGGGAACACAAACCTTAAGGGTGAGGTGCCATGGGATATTGGAAACTGCACCAACTTGGTGGTGTTAGGCCTTGCAGAAACCAGCATTTCTGGGAATCTTCCTTCTTCAATAGGGATGCTGAAAAGAGTTCAGACCATAGCCATTTACACAACTCTGCTGTCAGGCTCTATACCAGAAGAGATAGGGAAGTGCAGTGAGTTGCAGAACCTGTACTTGTATCAGAACTCAATCTCTGGTTCAATCCCAAGTCAAATTGGAGAGCTCAGCAAGCTTAAGAATCTTCTCTTGTGGCAAAACAATATAGTTGGTATAATCCCAGAAGAGCTTGGAAGCTGCACTCAACTGGAAGTCATAGACATGTCAGAAAATCTTCTCACAGGTAGCATACCAACCAGTTTTGGTAAGCTATCAAATCTGCAAGGGCTTCAACTGAGTGTTAACAAGCTTTCAGGCATTATACCTCCTGAAATCACAAATTGCACTTCCCTGACTCAATTGGAAGTTGACAATAATGCTATCTCTGGAGAGATTCCTCCTGTTATCGGAAACTTGAGAAGCTTGACTCTCTTCTTTGCATGGCAGAACAAGCTGACAGGAAAAATCCCAGATAGTCTTACACAGTGCCAAGATCTTCAGGCACTTGATCTCTCTTACAACAATTTAACTGGTCCAATACCCAAACAACTTTTTGGACTGAGGAACCTCACTAAACTGCTGCTTCTTTCCAATGATTTGTCTGGCTTTATACCACCTGAGATAGGTAATTGCACAAGCCTCTACAGGTTGAGGTTAAATCACAATAGACTGTCAGGTACAGTTCCATCTGAGATCACCAACTTGAAGAATTTGAACTTCTTGGACGTGAGCAGCAATCATCTTGTAGGGGAAATTCCTCCTACACTATCCAGATGCCAAAACCTTGAGTTTCTGGACCTTCACTCAAATAGTCTTATTGGCTCAGTTCCAAACAATCTGCCCAAAAACCTGCAGCTAATCGACCTCTCAGACAACAGGCTAACAGGTGAACTGAGCCATTCCATTGGTTCATTAACCGAGTTAGCCAAACTCAACTTGGGAAAGAATCAACTCAGCGGAAGCATCCCTGCTGAGATCCTATCCTGCTCCAAGTTACAACTTCTGGACTTGGGAAGCAATAGTTTCTCTGGAGAAATTCCCAAGGAAATTGCTCAAATTCCTTCACTAGAAATCTTTCTCAATCTTAGCTGTAACCAGTTTTCTGGTGAAATTCCACCCCAGTTCTACGGTCTTAGAAAACTTGGAGTGCTTGACCTCTCCCACAACAAGCTCTCAGGGAAGTTGGATGCTCTCTCTAACCTTCAAAACCTTGTTTCGTTAAATGTTTCCTTCAATGACTTCACCGGAGAATTGCCTAACACCCCATTCTTCAGGAAGCTCCCTCTCAGTGATCTCACAGGAAATGATGGCCTCTACATTGTTGGTTCTGTAACTCCGACAGACAGAAAGGAAGCCAAGGTTCATGCCAGGTTGTTTATGAAAATTATATTATCCATTCTCTTAAGCACCAGTGCAGTACTAGTACTGCTCACAATCCATGTCTTGATTCGTGCTCATGTTTCTAACAAAGCATTCATGGGAAACAACAATTGGGTGTTAACTCTGTATCAGAAGTTTGAATTCTCAGTTGATGATATTGTCCGGAATTTGACTTCATCCAATGTGATTGGCACTGGAAGCTCTGGAGTTGTGTACAAGGTTACAGTTCCAAATGGCCAAACACTAGCAGTTAAAAAGATGTGGTCATCGGCAGAGTCAGGAGCATTTACTTCTGAAATTCAAACACTGAGTTCAATTAGACATGAAAACATCATCAAGCTTCTGGGTTGGGGGTCCAGCAAGAACATGAAGCTGCTGTTTTATGAGTACCTCCCTAACGGAAGCCTGAGTTCATTACTTCATGGTTCAGGAAAGGGAAAAGCAGAATGGGAAATCAGATATGATGTTATGGTAGGAGTGGCTAATGCACTTGCATATTTGCACCATGATTGTGAGCCTTCCATATTGCATGGAGATGTCAAAGCCATGAACGTGTTGTTAGGTCCTGGCTATCAGCCTTACCTATCTGACTTTGGCCTAGCTAGAATTGCAAGTGAAAATGGTGATTGTACAAATTCCAAGCCAGTTCAAAGACCCTACCTTGCTGGCTCCTATGGGTACATGGCTCCAGAACATGCATCTATGCAGCAGATCACTGAGAAGAGTGATGTGTACAGTTTTGGGGTGGTCCTACTTGAGGTCCTGACAGGAAGGCACCCTCTTGACCCAACACTTCCTGGAGGTGGTGCACACTTGGTTCAGTGGGTTAGGAACCACTTAGCAAGAAAAGGAGACCCATCTGACATTCTTGACCCAACACTCAGAGGAAGAACTGATTCCACTGTGCATGAAATGTTACAAACTCTAGCTGTCTCATTGCTATGTGTCAGCACCAGAGCTGAGGACCGTCCAACAATGAATGACACTGTTGCAATGCTTAGGGAAATCCGATTTGTTGAGGCACCAACCACAGCTTCTGATGCATCCAATGGAGTTTCAACAGTGCATGCTTCTCCATCACCTCTTAAAACTGTAGTTTCACATGGAACTTCTAAATGTTCCTTTAATTTTTCTGATGACTCAATCTGTTGA 3270 0.4312 MSLSLRNLSPSSKIFSLSLLLLFHCCYSQLNEQGQALLAWKNSLNSSADALVSWNPSSTTPCNWFGVRCNLQGELVEINLTSVNLQGSLPSNFQLFRSLRILALPAANITGRIPKEIGDCKELIFIDLSGNFLFGEIPEEICRLSKLQTLALHTNFLEGNIPSSIGNLSSLVNLTLYDNKLSGEIPKSISSLTELQVLRVGGNTNLKGEVPWDIGNCTNLVVLGLAETSISGNLPSSIGMLKRVQTIAIYTTLLSGSIPEEIGKCSELQNLYLYQNSISGSIPSQIGELSKLKNLLLWQNNIVGIIPEELGSCTQLEVIDMSENLLTGSIPTSFGKLSNLQGLQLSVNKLSGIIPPEITNCTSLTQLEVDNNAISGEIPPVIGNLRSLTLFFAWQNKLTGKIPDSLTQCQDLQALDLSYNNLTGPIPKQLFGLRNLTKLLLLSNDLSGFIPPEIGNCTSLYRLRLNHNRLSGTVPSEITNLKNLNFLDVSSNHLVGEIPPTLSRCQNLEFLDLHSNSLIGSVPNNLPKNLQLIDLSDNRLTGELSHSIGSLTELAKLNLGKNQLSGSIPAEILSCSKLQLLDLGSNSFSGEIPKEIAQIPSLEIFLNLSCNQFSGEIPPQFYGLRKLGVLDLSHNKLSGKLDALSNLQNLVSLNVSFNDFTGELPNTPFFRKLPLSDLTGNDGLYIVGSVTPTDRKEAKVHARLFMKIILSILLSTSAVLVLLTIHVLIRAHVSNKAFMGNNNWVLTLYQKFEFSVDDIVRNLTSSNVIGTGSSGVVYKVTVPNGQTLAVKKMWSSAESGAFTSEIQTLSSIRHENIIKLLGWGSSKNMKLLFYEYLPNGSLSSLLHGSGKGKAEWEIRYDVMVGVANALAYLHHDCEPSILHGDVKAMNVLLGPGYQPYLSDFGLARIASENGDCTNSKPVQRPYLAGSYGYMAPEHASMQQITEKSDVYSFGVVLLEVLTGRHPLDPTLPGGGAHLVQWVRNHLARKGDPSDILDPTLRGRTDSTVHEMLQTLAVSLLCVSTRAEDRPTMNDTVAMLREIRFVEAPTTASDASNGVSTVHASPSPLKTVVSHGTSKCSFNFSDDSIC 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00273 1089 ProSitePatterns Serine/Threonine protein kinases active-site signature. 881 893 IPR008271 GO:0004672|GO:0006468
Vimu1g00273 1089 SUPERFAMILY L domain-like 31 307 - -
Vimu1g00273 1089 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 732 836 - -
Vimu1g00273 1089 Gene3D Ribonuclease Inhibitor 187 328 IPR032675 -
Vimu1g00273 1089 FunFam Leucine-rich receptor-like protein kinase family protein 30 188 - -
Vimu1g00273 1089 ProSiteProfiles Protein kinase domain profile. 763 1044 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00273 1089 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Vimu1g00273 1089 SMART serkin_6 763 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00273 1089 FunFam Putative LRR receptor-like serine/threonine-protein kinase 605 690 - -
Vimu1g00273 1089 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 189 280 - -
Vimu1g00273 1089 PANTHER UNNAMED PRODUCT 18 524 - -
Vimu1g00273 1089 Gene3D Ribonuclease Inhibitor 527 604 IPR032675 -
Vimu1g00273 1089 Gene3D Ribonuclease Inhibitor 429 526 IPR032675 -
Vimu1g00273 1089 Gene3D Ribonuclease Inhibitor 30 186 IPR032675 -
Vimu1g00273 1089 ProSiteProfiles Leucine-rich repeat profile. 626 648 IPR001611 GO:0005515
Vimu1g00273 1089 Pfam Leucine rich repeat 606 660 IPR001611 GO:0005515
Vimu1g00273 1089 Pfam Leucine rich repeat 291 341 IPR001611 GO:0005515
Vimu1g00273 1089 Pfam Leucine rich repeat 388 446 IPR001611 GO:0005515
Vimu1g00273 1089 Pfam Leucine Rich Repeat 529 551 IPR001611 GO:0005515
Vimu1g00273 1089 Pfam Protein kinase domain 766 1033 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00273 1089 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 837 1056 - -
Vimu1g00273 1089 SUPERFAMILY Protein kinase-like (PK-like) 753 1039 IPR011009 -
Vimu1g00273 1089 Gene3D Phosphorylase Kinase; domain 1 733 836 - -
Vimu1g00273 1089 SMART LRR_typ_2 168 192 IPR003591 -
Vimu1g00273 1089 SMART LRR_typ_2 433 457 IPR003591 -
Vimu1g00273 1089 SMART LRR_typ_2 289 313 IPR003591 -
Vimu1g00273 1089 SMART LRR_typ_2 337 361 IPR003591 -
Vimu1g00273 1089 SMART LRR_typ_2 624 647 IPR003591 -
Vimu1g00273 1089 SMART LRR_typ_2 551 575 IPR003591 -
Vimu1g00273 1089 SMART LRR_typ_2 481 505 IPR003591 -
Vimu1g00273 1089 FunFam Leucine-rich receptor-like protein kinase family protein 332 604 - -
Vimu1g00273 1089 ProSitePatterns Protein kinases ATP-binding region signature. 769 792 IPR017441 GO:0005524
Vimu1g00273 1089 SMART LRR_sd22_2 313 342 - -
Vimu1g00273 1089 SMART LRR_sd22_2 265 291 - -
Vimu1g00273 1089 SMART LRR_sd22_2 481 510 - -
Vimu1g00273 1089 SMART LRR_sd22_2 624 649 - -
Vimu1g00273 1089 SMART LRR_sd22_2 168 194 - -
Vimu1g00273 1089 SMART LRR_sd22_2 527 553 - -
Vimu1g00273 1089 Gene3D Ribonuclease Inhibitor 329 428 IPR032675 -
Vimu1g00273 1089 Gene3D Ribonuclease Inhibitor 605 689 IPR032675 -
Vimu1g00273 1089 PRINTS Leucine-rich repeat signature 624 637 - -
Vimu1g00273 1089 PRINTS Leucine-rich repeat signature 412 425 - -
Vimu1g00273 1089 SUPERFAMILY L domain-like 283 681 - -
Vimu1g00273 1089 Gene3D Transferase(Phosphotransferase) domain 1 837 1058 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00273 Vimu-Chr1 1586809 1590738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00273 26 1088 Receptor kinase-like Gene Family AT4G26540 65.306 0.0 1359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu1g00273 Pkinase 8.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00273 - - gmx:100813139 1848.94