Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00268 ATGGGAACTAAGTCAGTTGTGGATTTAATGGAGTCTTCATCTGAGGTTCACTTTTCTGGAGTTTACATGGATGACATAGAGCAAAGAAACGCTGGCACAGAGCAACCGACTACTTCTGCAACTGACATGAACAAACAACCTTTTGTGATAGGTGTTGCTGGTGGAGCAGCATCCGGTAAGACATCAGTTTGTGATTTGATTATTCAGCAGCTTCATGACCAACGAGTTGTACTTGTTAATCAGGATTCATTTTACCATAATTTGACTGAGGAGCAACTTATAAGAGTACAAGATTACAACTTTGACCATCCTGAAGCTTTTGATACTGAGCATTTGCTACGTGTCATGGACAAGTTGAAGTGTGGCCAAGCAGTAGATATTCCGAAGTATGATTTTAAGGGTTACAAAACTGGTGTTTTTCCAGCGAGACGGGTAAACCTGGCGGATGTTATTATTTTGGAAGGTATCCTTGTTTTCCATGATCCACGAGTGCGGGCGTTGATGAATATGAAGATATTTGTCGACACAGGTTCTGTTGTCATATTCATTCCTTTTGGTCCTGTGGGCTTAAATTTTACTCTTCGTAATTCATTTTGTGATATAGGAGAGTGGATATCCTGCACCTTATCTAAAATTGTTCATGTTCTTCTCACTGCAGATGCTGATATTCGCTTGGCGAGAAGAATTAAACGGGATACTGCTGACAATGCTCGTGATATTGGAGCTGTGCTCGATCAGTATTCTAAATTTGTGAAGCCGGCTTTTGATGACTTTATTCTTCCCACCAAAAAGTATGCCGATATCATTATACCCCGTGGAGGAGATAATCATGTAGCTATTGATTTGATTGTACAGCATATCCGCATGAAGCTTGGGCAGCATGACTTGTGTAAAATATACCCTAGCTTATATGTTATTCAGTCTACTTTTCAGATACGGGGTATGCATACCCTGATTCGTGATTCTCAAACAACGAAACATGACTTTGTATTTTATTCTGACCGTTTGATTCGTTTGGTTGTAGAACATGGCCTAGGGCATCTTCCATTTACGGAAAAGCAAGTAATCACTCCAACTGGATCGGTTTACAGTGGCGTGGATTTCTGTAAGAGGTTGTGTGGTGTCTCCATCATCCGGAGTGGCGAGAGTATGGAAAATGCTTTACGAGCATGCTGCAAAGGCATCAAAATTGGGAAAATTCTTATTCACAGAGAGGGTGACAATGGTCAACAGCTGATATATGAGAAGTTGCCAAAGGATATCTCAGATAGACATGTATTGCTGTTGGATCCTATCTTAGGGACAGGTAATTCGGCTGTTCAAGCAATTTCTCTACTTTTAAAGAAGGGTGTACCAGAGTCAAACATTATATTTCTCAATCTGATATCAGCACCTCAAGGTGTTCATGTGGTCTGCAAAAGCTTCCCAAAAATAAAGATCGTGACATCTGATATTGAAATTGGTTTGAATGAAGATTTCCGTGTCATACCTGGCATGGGTGAGTTTGGGGATCGGTATTTTGGAACAGATGATGACCGGCAGGTGCTGCTCCCTTCACAGTAG 1563 0.4101 MGTKSVVDLMESSSEVHFSGVYMDDIEQRNAGTEQPTTSATDMNKQPFVIGVAGGAASGKTSVCDLIIQQLHDQRVVLVNQDSFYHNLTEEQLIRVQDYNFDHPEAFDTEHLLRVMDKLKCGQAVDIPKYDFKGYKTGVFPARRVNLADVIILEGILVFHDPRVRALMNMKIFVDTGSVVIFIPFGPVGLNFTLRNSFCDIGEWISCTLSKIVHVLLTADADIRLARRIKRDTADNARDIGAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRMKLGQHDLCKIYPSLYVIQSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGSVYSGVDFCKRLCGVSIIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPKDISDRHVLLLDPILGTGNSAVQAISLLLKKGVPESNIIFLNLISAPQGVHVVCKSFPKIKIVTSDIEIGLNEDFRVIPGMGEFGDRYFGTDDDRQVLLPSQ 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00268 520 Pfam Uracil phosphoribosyltransferase 308 509 - -
Vimu1g00268 520 PANTHER URIDINE KINASE 41 420 - -
Vimu1g00268 520 CDD PRTases_typeI 367 485 IPR000836 -
Vimu1g00268 520 Gene3D - 43 293 IPR027417 -
Vimu1g00268 520 SUPERFAMILY PRTase-like 293 510 IPR029057 -
Vimu1g00268 520 Gene3D - 294 509 IPR029057 -
Vimu1g00268 520 PRINTS Uridine kinase signature 47 64 - -
Vimu1g00268 520 PRINTS Uridine kinase signature 77 88 - -
Vimu1g00268 520 PRINTS Uridine kinase signature 122 137 - -
Vimu1g00268 520 FunFam Uridine kinase 294 509 - -
Vimu1g00268 520 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 45 343 IPR027417 -
Vimu1g00268 520 CDD UMPK 49 288 IPR000764 -
Vimu1g00268 520 Pfam Phosphoribulokinase / Uridine kinase family 214 278 IPR006083 GO:0005524|GO:0016301
Vimu1g00268 520 Pfam Phosphoribulokinase / Uridine kinase family 49 178 IPR006083 GO:0005524|GO:0016301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00268 Vimu-Chr1 1555982 1562852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00268 1 512 PRT Gene Family AT4G26510 75.969 0.0 786
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00268 K00876 - gmx:100798205 863.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00268 1 1555982 1562852 Vimu1g00268 1 1555982 1562852 ECH
Vimu2g02332 2 18715929 18722388 Vimu1g00268 1 1555982 1562852 PCT