Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00265 ATGCCATTAATCCTAAATCTCACACCACTCGCGGGACCTGCCACGACTCTCCGATCTCCGCCCAGTGTCCCGATGGTCAGGGCATTCGCGGCGACGATCGATTCCCGGAGGCCTGCGAGCCTCTACGAAGTTCTCCGGATCAAGCAGAACGCGTCGGCGGTGGAGATAAAATCGGCGTACCGGAACCTGGCGAAGGTGTACCACCCTGATTCCGCGCTCCGGCGATCGGAGTCCGACGAACGGGACTTCATCGAGATTCACGACGCGTACCAAACGCTGTCGGATCCGTCGGCGAGAGCCGTGTACGATCTGTCATTGGTGGCGGCGCGTGGCGGTAGTGGCTCCTTCACTTCTTTGGTGGCCCCCGATGGGTCTTCCCGGTTGTACTACCAGACCCGCAAGTGGGAAACGGATCAGTGCTGGTAG 426 0.6056 MPLILNLTPLAGPATTLRSPPSVPMVRAFAATIDSRRPASLYEVLRIKQNASAVEIKSAYRNLAKVYHPDSALRRSESDERDFIEIHDAYQTLSDPSARAVYDLSLVAARGGSGSFTSLVAPDGSSRLYYQTRKWETDQCW 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00265 141 PRINTS DnaJ domain signature 78 98 IPR001623 -
Vimu1g00265 141 PRINTS DnaJ domain signature 60 75 IPR001623 -
Vimu1g00265 141 PRINTS DnaJ domain signature 42 60 IPR001623 -
Vimu1g00265 141 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 27 141 - -
Vimu1g00265 141 ProSitePatterns Nt-dnaJ domain signature. 83 102 IPR018253 -
Vimu1g00265 141 SUPERFAMILY Chaperone J-domain 40 116 IPR036869 -
Vimu1g00265 141 ProSiteProfiles dnaJ domain profile. 40 106 IPR001623 -
Vimu1g00265 141 Pfam DnaJ domain 41 103 IPR001623 -
Vimu1g00265 141 CDD DnaJ 42 95 IPR001623 -
Vimu1g00265 141 SMART dnaj_3 39 98 IPR001623 -
Vimu1g00265 141 Gene3D DnaJ domain 30 116 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00265 Vimu-Chr1 1540709 1541134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00265 42 103 C2H2 Transcription Factor Family AT1G74250 43.939 6.63e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00265 - - gmx:100786034 213.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00265 1 1540709 1541134 Vimu1g00265 1 1540709 1541134 ECH
Vimu2g02318 2 18593732 18594545 Vimu1g00265 1 1540709 1541134 PCT