Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00260 ATGGCACACAGGTTACTCAGAGACCACGAAGCCGACGGTTGGGAGCGTTCTGATTTCCCCATAATATGCGAATCCTGTCTCGGAGACAGCCCCTATGTTCGAATGACAAGGGCAGAGTATGACAAGGAGTGCAAGATTTGTACACGGCCATTCACTGTGTTTAGATGGAGACCAGGCAGAGATGCGAGATATAAGAAAACTGAGATATGTCAGACATGTAGTAAATTGAAAAATGTCTGTCAAGTGTGCCTTCTGGACCTTGAATATGGACTACCTGTTCAAGTCCGAGACACAGCTCTTCATATTGATTCCAATGATGCCATTCCAAAAAGTGATGTTAATAGGGAGTATTTTGCCGAAGAGCATGACCGTAGGGCTAGAGCTGGTATAGATTATGAATCTTCTTATGGCAAAGCACGCCCTAATGATACTATCCTGAAGCTTCAAAGAACAACCCCTTATTACAAAAGAAACAGAGCACATATTTGCAGTTTCTACATAAGGGGTGAATGTACCAGAGGAGCCGAGTGCCCTTATAGACACGAGATGCCAGAAACTGGGGAATTGTCTCAACAAAATATTAAAGATCGTTATTATGGGGTGAACGATCCAGTGGCCTTGAAGCTACTTGGCAAGGCTGGGGAGATGGCCACACTGGAGGCTCCTGAGGACGAGAGCATTAAAACACTCTATGTTGGTGGGCTTGATGCTAGGGTCACTGAGCAGGATTTGCGGGATCACTTCTATGCCCATGGAGAAATTGAATCTATAAAAATGGTTCTGCAACGGGCTTGTGCTTTTGTATCGTATACTACCCGAGAAGGTGCTGAAAAGGCAGCAGAAGAACTCTCAAACAAACTGGTTATTAAAGGCCTAAGGCTAAAGCTGATGTGGGGCAGGCCTCAGACATCAAAACCCGAGTCAGATGGCTCTGATCAAGCTAGGCAGCAGGCATCTGTGGCCCATAGTGGATTGTTGCCTCGGGCAGTTATATCACAGCAGCAGAATCAGGACCAAACACAAGGAACATTTTTCTATAACAATCCACCACCTATGCAGCAGGAAAGAAGCTACTACCCATCAATGGATCCTCAAAGAATGGGTGCTCTTATTTCATCTCAAGACGGTCCTCCTGGTGGGCCTTCTGGGTCCGGGGAGAACAAGTCCAGTTTGGAGAAGCAGCAAATGCAACACTATGCCCGACCAATGATGCCTCCTCCACCTGGCCAATATCACCATCAGTATTACCCTCCATATGGTTATATGCAGCCAGTCCCTCCTTATCAACAGTACCCACCACCTCCATACAATACTGCTGTCCCTCCATCCCAGCCGCCCGCTCCAAATCATCCTTATCAGCATTCTACGCAACCAGGGTCTTCACAGACAGGGTCTGTACAGGCTGCACCTGCCCCAGCTGAAACTGGAACATCAACATCAGGGTCACAGCAGCAATGA 1458 0.4726 MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALHIDSNDAIPKSDVNREYFAEEHDRRARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEMATLEAPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVSYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTSKPESDGSDQARQQASVAHSGLLPRAVISQQQNQDQTQGTFFYNNPPPMQQERSYYPSMDPQRMGALISSQDGPPGGPSGSGENKSSLEKQQMQHYARPMMPPPPGQYHHQYYPPYGYMQPVPPYQQYPPPPYNTAVPPSQPPAPNHPYQHSTQPGSSQTGSVQAAPAPAETGTSTSGSQQQ 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00260 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Vimu1g00260 485 SUPERFAMILY RNA-binding domain, RBD 222 310 IPR035979 GO:0003676
Vimu1g00260 485 MobiDBLite consensus disorder prediction 453 485 - -
Vimu1g00260 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Vimu1g00260 485 FunFam Zinc finger CCCH domain-containing protein 40 213 309 - -
Vimu1g00260 485 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Vimu1g00260 485 MobiDBLite consensus disorder prediction 334 485 - -
Vimu1g00260 485 SMART rrm1_1 229 297 IPR000504 GO:0003723
Vimu1g00260 485 Gene3D - 149 205 - -
Vimu1g00260 485 MobiDBLite consensus disorder prediction 304 320 - -
Vimu1g00260 485 FunFam Zinc finger CCCH domain-containing protein 4 149 208 - -
Vimu1g00260 485 Gene3D - 212 310 IPR012677 -
Vimu1g00260 485 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 376 IPR039171 GO:0003723
Vimu1g00260 485 MobiDBLite consensus disorder prediction 377 396 - -
Vimu1g00260 485 MobiDBLite consensus disorder prediction 299 321 - -
Vimu1g00260 485 MobiDBLite consensus disorder prediction 420 452 - -
Vimu1g00260 485 CDD RRM_RBM22 227 300 - -
Vimu1g00260 485 MobiDBLite consensus disorder prediction 334 360 - -
Vimu1g00260 485 SMART c3hfinal6 157 183 IPR000571 GO:0046872
Vimu1g00260 485 Pfam Torus domain 139 194 IPR032297 -
Vimu1g00260 485 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00260 Vimu-Chr1 1513671 1517075 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00260 215 289 Eukaryotic Initiation Factors Gene Family AT1G49760 33.750 4.22e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00260 K12872 - gmx:100778975 853.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00260 1 1513671 1517075 Vimu1g00260 1 1513671 1517075 ECH
Vimu2g02679 2 23649181 23652982 Vimu1g00260 1 1513671 1517075 PCT