Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00258 ATGCAATCAAAATCTGAAACTACTAATCAGCCAAGGTCTAATCCACATTCCTTTACGCCTAACACTGTTTATTCTGAACCCTGGTGGCGAGGTACTCATTACAATTCTGCTCCGAAAGCAATGTCAGGGGTGAATGCATCAAATTCATCATCACTTGAACGCCCTAATGCCGATTCTGAATCCAGTGAAGGTCAATCTTTGTCCAACAATGGGATGAATGAAGAAGATGATGATGCCACCAAAGAATCGCAACCCACTGCTCCTAATCAATCAGGAAATTATGGACAAGACCACCAAGCCGTGCTGCATTCTTCATCATCTGCACCTTCTAGGCGTGATGACTGCCTTCCACATGCTCCACAACTGGAACTTATTAGCCATTCATTTGGATATGCTCCTTATATAGGAATGCCTCATGCCAGAATGGCTTTGCCGCTTGAGATGGCTCAAGAGCCTGTTTATGTGAATGCCAAACAGTACCAAGGAATTCTGAGACGAAGACAGGCTCGGGCTAAAGCAGAGCTTGAAAAGAAATTAATAAAAGTCAGAAAGCCATATCTTCATGAATCTCGTCATCAGCATGCTATGAGAAGAGCAAGAGGTAACGGAGGGCGTTTTGCAAAGAAAACTGAGGTCGAAGCTTCAAAACACACGAACAAGGAAAAGGATACGGGTGCAGCAGGTCCAGTTTCATTGCCACAGTCAGTTAGTTCATCTGGGTTGGGACCAGTACCCTCTGAAGTGCATGAGAGACTTGAAAAACACAACTATGCAAATGTTTTGCAGTCATCATCTGCGTTCTGTTTGCACTCCGGCGAGAGAGTAGAGGAAGGAGACTGTTCAGGTCAACAACGAGGAAGCATCTCCTCTGAGCAAAGCTCACAGAGGCGTCTTGCTATTCAGTAA 906 0.4492 MQSKSETTNQPRSNPHSFTPNTVYSEPWWRGTHYNSAPKAMSGVNASNSSSLERPNADSESSEGQSLSNNGMNEEDDDATKESQPTAPNQSGNYGQDHQAVLHSSSSAPSRRDDCLPHAPQLELISHSFGYAPYIGMPHARMALPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGNGGRFAKKTEVEASKHTNKEKDTGAAGPVSLPQSVSSSGLGPVPSEVHERLEKHNYANVLQSSSAFCLHSGERVEEGDCSGQQRGSISSEQSSQRRLAIQ 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00258 301 MobiDBLite consensus disorder prediction 273 301 - -
Vimu1g00258 301 MobiDBLite consensus disorder prediction 282 301 - -
Vimu1g00258 301 MobiDBLite consensus disorder prediction 1 29 - -
Vimu1g00258 301 ProSitePatterns NF-YA/HAP2 subunit signature. 154 174 IPR018362 GO:0003677|GO:0016602
Vimu1g00258 301 ProSiteProfiles NF-YA/HAP2 family profile. 149 209 IPR001289 GO:0003700|GO:0006355
Vimu1g00258 301 SMART cbf3 148 209 IPR001289 GO:0003700|GO:0006355
Vimu1g00258 301 MobiDBLite consensus disorder prediction 211 246 - -
Vimu1g00258 301 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 10 268 IPR001289 GO:0003700|GO:0006355
Vimu1g00258 301 MobiDBLite consensus disorder prediction 1 115 - -
Vimu1g00258 301 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 151 206 IPR001289 GO:0003700|GO:0006355
Vimu1g00258 301 PRINTS CCAAT-binding transcription factor subunit B signature 152 174 IPR001289 GO:0003700|GO:0006355
Vimu1g00258 301 PRINTS CCAAT-binding transcription factor subunit B signature 183 206 IPR001289 GO:0003700|GO:0006355
Vimu1g00258 301 MobiDBLite consensus disorder prediction 38 73 - -
Vimu1g00258 301 MobiDBLite consensus disorder prediction 83 111 - -
Vimu1g00258 301 Gene3D - 149 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00258 Vimu-Chr1 1501879 1503489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00258 76 301 CCAAT-HAP2 Transcription Factor Family AT3G20910 49.383 1.28e-58 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vimu1g00258 CBFB_NFYA 9.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00258 K08064 - gmx:102664020 464.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02298 2 18288522 18291260 Vimu1g00258 1 1501879 1503489 PCT