Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00250 ATGGACATTCTGAGTGGTTTTTTGTCTGATGTTTTAAAAGAGGTGGTGTGTGGGGCTGTTAATCAATTACAATACTCTTTTTGCTTTAATAGTTTTGTTAAAGAGCTTGAAAAAGAAAAAGAGAATTTGATAGAAACAAAAATAAGTGTAGAAGATCGTGTCATACATGCTCAAAGACAAACCTTAAAGACTGCTGAAGTTATTCATAAATGGTTGGAGAATGCAAACACTAATTCAGAATTTGTGAATCGTTTGCTGAGAGAGACAAACGCCAAAAAGAGTTGCTTTTTTGGATATTTTCCAAATTGGATTTGGCGATACCGTTTAGGAAAAAAGTTGGCAATTAAAAAAGGAGACCTTCAAAAGATCATTCAAGAAGGTAGACAATATATACAACTTCAACGCACTGCCTCAATTCCTTCAAACACTTTTGATATTCTCACAGAAAAAAGTATTAATTTTGATAGTAGAAAATCTGCTTTTGATCAACTTGTGAAAGCACTAAAAGATGATGGGGTTGCCATGATTGGATTGTACGGGATGGGGGGTTGTGGTAAAACTACATTAGCAATGGAAGTTAAGAAGATAGCAGAAGCTGAGCATCTTTTTCACAAAGTTGTTTTTGTTCCTGTGTCTAGTACAGTAGAAGTTCCAAGGATTCAAGAAAAAATTGCTAGTTCATTGCAATATCCATTTCCAGAAAACCAAGAAATGGAAAGAGCCCAACGCTTGTGCATGAGATTAACCCAAGAAAAAATACTTATGATTCTAGATGATGTGTGGGAAAAACTTGATTTTGGTCGCATAGGGATTCCCTCCTCTGAATACCATAAAGGCTGCAAGATTCTCATTACCACTAGATTGAAAGAAGTTTGTATTTCAATGGATTGTCAAAAAAATATTTATCTACCATTCTTAACTGATGAAGAATCGTGGACTCTCTTCCAAAACAAAGCACTCATATCTAAAGACACTCCTGAAAACATCAATCATTTGGCAATATCAATTTCAAAAGAATGTAAAGGATTGCCTGTTGCCATTGTAGCTGTTGCTAGTAGCTTGAAGGGAAAAGAAGAAGTGATATGGCGTGCTGCGTTGAATAAATTGAAAAGTTCTAAGCAGATCAATATTGGAAAAGGTTTACGAGATCCCTATAAGTGTTTAAAGTTGAGCTACGATAATCTAGATGATGAAGAAGCTAAATCACTTTTCCTTTTGTGCTCTGCATTCCCTGAAGATTATGAGATTTCAGTGGAATGTTTAATAAGATGTGCAATTGGGTTAGGTGTGGCTGGAGAAGTTGGCACATATGAAGAAGCAAGAACTGAAATGACTGCAGTCAAAATGAATCTTGTAAGTTCTTGTTTGATGATGGAGGCGGGTGTTGAACGTGTAAAAATGCATGACTTGGTTCGTGATGTAGCCCATTGGATAGCAAAGAATGAAAATAAGATGATCAAGTGTGAAGTGGAAAAGGGTGTAAGTTTGGAGGAAGGTTCAATAAGATATCTATGGTGTGTGAAATTTCCAGATGGTATGGATTGTTCCAATCTTGAGTTTTTAACTATACAAACAAAATTGGAAGTATCCGATGGAATTTTTGAAAGAATGGGAAAACTTAGAGTTTTGATTATTACCAATAAGAACAACTATAGGTTGCAGTTGTCAACAACGTCTTTCAAATCATTAACAAATCTCCGTTGTCTAGTCCTTCAATATTGGGAATTGAGCGATATTTCATTTCTGAGAGATATGAAGAAACTACAAAGTCTTTCCTTTCATGGTTGTTCATTGCCTTCCTTCCTTGACTTGCAAACTGATGTTGCAGTTACAACACTAACAAACTTGAAGTTGTTAGAGTTTATAAGTTGTGACATTGAAAGCAATATTTTTGAAGAGATCAAAAGAATCCCATTTCTAGAAGAATTGTATATTTGTAAAGACTATCCGAAAGATCGAAAGGAAGAAAGTGTTAAATTCTCTAACTCATTTAGTGTCCCCCAAAAGCTGCAAAGGTATGGAATTATATTAGAATATAATTTTTATAATTACTGTAGAATGCGCGAGTTTTTCTCTTATGAGAGAACTTTAGGAATTAATTATTTTGACATATCAAATGAGGTTATTAAAGGTTTGGCCAAAAAAGCAAAAGAGCTATTTGTAGGAAATATTAAAGGAGGTGCAAAAAATATGATGCCTGATATATTTGAAATTGAAGAAGGCATGAATGAGTTGAAAGAACTGGGGATAGGTGATAGTGAAGAAATAGAGTGTTTGGTTGACACTAGCAATCATTTGAGTAAGATGGGCAATATTTTTTCCAACTTACGTTATATGGAGATCTTCAAGATGAATCATCTAAAAACCTTATGGCATGGTTGTCTACCTGCCAATGGGTCTTTTGAAAAATTGGGAGAGCTATATATAATAAATTGCCCACAATTAACTTGTCTCTTCACATATGTCATTGCTCAACGAATGACAGAGTTGAAAATATTACACATACGCAATTGTTCCAAATTGAAGCATATAGTAGTTGATGATGACAAAACAAAGAAAAATGAAGATCAGTTTCTCCTTGCAATGTTTTCAAATTTGAAAAGCATAATTATTTCGGAGTGTTACTCCTTGCAAGATATATTGGCAACACCTGTCAATGAGTGTTTTGAAAAATTAGAGGAGGTATATATACTATTTTGCCCACAATTAACATGTCTCTTCACATATGTCATTGCTCAACGAATGACAGAGTTGAAAAAATTACTCATAGACGACTGTTCCAAATTGAAACATATAGTAGTTTATGATGACAAAACAAAGAAAAATGAAGATCAATTCACAAATGGGCATTCGATACGATCCAAAATTTTCCAGAAACTTCAACAAGTGAATATAATTGGGTGTGGAGAATTAAAACATGTATTCTCAGCCAGTGTTACAGGAGGCCTACCTCAATTGAAAGAGCTTCATATTAGAAATTGCGATATGCTAGAACAAATAATTGAGGAAGTTCTTCCACCACCAGCACACCATGAAGAAACAAACGAAATTGTGAACAATAGCTCAGATATATTCACAGCACCTGTCAAGGGGTGTTTTGAAAAATTAGAGAAGATATATATAGAAGATTGCCCACAATTAACATATCTCTTCACATATGCTCAAGGTATGAGAGAGTTGAAAATATTAGAAGAATTGTCCATAGCTAAATGTCATGGTTTGAAGCATATAGTAATTTCTGAAAGAGTGAAAGGAAATAAAAAGGAAAACATGGTTGAAGATGAGCATGAATTTGAAAGTGATCTTTCAATGTTCTCAAATTTGAAAAGGATGGTTATTCGGTATTGTGTCTCGTTGCAAGATATATTCGCACCACCTGTCAATTATGAGTGTTTTGAAAAATTAGAGGAGTTAGGTATAGAAGATTGCCCACAATTAACAAATCTCTTCACATATGTCATTGCTCAAGATATGAGGGAGTTGAAAATATTACGCATAAGCTACTGTTCCAAATTGAAGCATATAGTAGTTGATGATGACAAAGCAAAGAAAAGTGAAGACCAGTTCACAAAAGGACATTCGATGCAATCCATAATTTTTCAGAATCTTCAAGAAGTGAGGATATTTAGATGTGGTGAATTAAAACATGTATTCTCAACAAGTATTACAGGAGGCCTAACTCAATTGAAAATCCTGAAGATTATAAATTGCAATATGCTAGAACAAATAATTGAGGAAGTTCTTCCACCACCACACAGCAAAGAAACAAACGAAATTGTAAACAATAGCTCAGCTACAGGTTTGGAAGACACTAAAATTTCTTTGTCGGATTTTGAGTCACTGATGTATGAACTAGAGAATTTAGATGAAGTTTGTACAAGCAACAATTCCACTGAGTTGCCTTCTTCACAGATCAATGAAAAGTTAGATAAGAAATTCACTGAGAAAGATTATGGTTCAAATGAAGTGACTTCTGCAACTTCGATAAATTCAGAGGTGGATGGAAAGTCTAATAGTGAAACATATGCACAAGAGTTGGTGGATGCAAAATCAACGACTGGATCACACTTGCCAGACCAACAAAATCAACTTGGACAAACTCAAAGTACCATCAAAATGTCTCAGGAATCGGATCCTACGCCAAAAAACACTTCTCCCCTTCAAATGAACCGTGATGATCCATCTACATCTCAAATTAAACCATGTTCTTCACAAGTCAATGATAACAATCAATCTATGTTGGATAGCAGAGTTGAAATGGTAGGTCAACATAACAAAGTTGAAACCAAAACCCTGGTGTCTGAAATACAAGAGTTCCAAAAAATAGACAGAAACAGTGAAATGGCATCAGACTTACAAGCTATGGAGCAAAATTTTCCAATAATTTCTTCTCCAAAGGTGACTCAGCGTACTGATGAAATAGAGGCAAACAACATTGGAAAAACTATGACATCAGATAAACTTGCAATACCAACTTCTGTGTTAGAGAATATTGAGGAAATAGGAAGAGAAAGGAGCAGAGGTGGACCTGCAACAGAGGAAGCTACAATTAAAACCTTGCCAATTGGTGGAGATAACATTAGCTTGGTTAGTGGTGTTACAATTCACAACTCAAGCGGTGCAAATATACTTCCTCATGATTCCCAGGTTGTTAAACAAGATAATGCTATGAATAAAGACAAGACAGAAATAGCATCATATAAAAATATCAAAATCCAAGAAGGGGTGAACTTGTTGGACAAAACAGAGGAAATGGGAATTGTTTCTAATAATAACGTTGTGATTACTCCAGCTTTTGCAGATACTCGTACAAGATTGGAAAAGTATAAGCACTTTGTTGATCTCAATGATTCACAAATTTCTCTGCTAGTGGAGGCGATAGAAGCATATCCTCATCTTTGGAATGCTTGTGAAAAGTTCACTGATCGCTTTCGAGCTTTTATGTTGAAAACATTGGCAGAAATGTTGTTGTTCCTTCGAAGTGAAAGTGTTGGTAGTGTTAATTCTGAGAGAGAAAAGGAGTTCCTTAAACTATGTGATGTAGCTGTTCAACTTGGATTTGAGAAGTCGTGGGTTGACGAAATGCGTCAACCTGTTGTGGGAAGGGATCCTAAGTTGGAGCATGCAAAGGCACAAATGGGTGAGCTTCTTAAGAGACATGATAATTTAATTGAGGAACTAGACAGTATAAAGGCGCCAATCGATGAACTTGTTAAGAGACACAATCATTTAACTCAAGAACTACACAATATGAAGAAACAACTTAGAACTCTTAATGACTATTTAGATGTTCCAACAAAATGTTTCGACTTTTTGTGA 5319 0.3503 MDILSGFLSDVLKEVVCGAVNQLQYSFCFNSFVKELEKEKENLIETKISVEDRVIHAQRQTLKTAEVIHKWLENANTNSEFVNRLLRETNAKKSCFFGYFPNWIWRYRLGKKLAIKKGDLQKIIQEGRQYIQLQRTASIPSNTFDILTEKSINFDSRKSAFDQLVKALKDDGVAMIGLYGMGGCGKTTLAMEVKKIAEAEHLFHKVVFVPVSSTVEVPRIQEKIASSLQYPFPENQEMERAQRLCMRLTQEKILMILDDVWEKLDFGRIGIPSSEYHKGCKILITTRLKEVCISMDCQKNIYLPFLTDEESWTLFQNKALISKDTPENINHLAISISKECKGLPVAIVAVASSLKGKEEVIWRAALNKLKSSKQINIGKGLRDPYKCLKLSYDNLDDEEAKSLFLLCSAFPEDYEISVECLIRCAIGLGVAGEVGTYEEARTEMTAVKMNLVSSCLMMEAGVERVKMHDLVRDVAHWIAKNENKMIKCEVEKGVSLEEGSIRYLWCVKFPDGMDCSNLEFLTIQTKLEVSDGIFERMGKLRVLIITNKNNYRLQLSTTSFKSLTNLRCLVLQYWELSDISFLRDMKKLQSLSFHGCSLPSFLDLQTDVAVTTLTNLKLLEFISCDIESNIFEEIKRIPFLEELYICKDYPKDRKEESVKFSNSFSVPQKLQRYGIILEYNFYNYCRMREFFSYERTLGINYFDISNEVIKGLAKKAKELFVGNIKGGAKNMMPDIFEIEEGMNELKELGIGDSEEIECLVDTSNHLSKMGNIFSNLRYMEIFKMNHLKTLWHGCLPANGSFEKLGELYIINCPQLTCLFTYVIAQRMTELKILHIRNCSKLKHIVVDDDKTKKNEDQFLLAMFSNLKSIIISECYSLQDILATPVNECFEKLEEVYILFCPQLTCLFTYVIAQRMTELKKLLIDDCSKLKHIVVYDDKTKKNEDQFTNGHSIRSKIFQKLQQVNIIGCGELKHVFSASVTGGLPQLKELHIRNCDMLEQIIEEVLPPPAHHEETNEIVNNSSDIFTAPVKGCFEKLEKIYIEDCPQLTYLFTYAQGMRELKILEELSIAKCHGLKHIVISERVKGNKKENMVEDEHEFESDLSMFSNLKRMVIRYCVSLQDIFAPPVNYECFEKLEELGIEDCPQLTNLFTYVIAQDMRELKILRISYCSKLKHIVVDDDKAKKSEDQFTKGHSMQSIIFQNLQEVRIFRCGELKHVFSTSITGGLTQLKILKIINCNMLEQIIEEVLPPPHSKETNEIVNNSSATGLEDTKISLSDFESLMYELENLDEVCTSNNSTELPSSQINEKLDKKFTEKDYGSNEVTSATSINSEVDGKSNSETYAQELVDAKSTTGSHLPDQQNQLGQTQSTIKMSQESDPTPKNTSPLQMNRDDPSTSQIKPCSSQVNDNNQSMLDSRVEMVGQHNKVETKTLVSEIQEFQKIDRNSEMASDLQAMEQNFPIISSPKVTQRTDEIEANNIGKTMTSDKLAIPTSVLENIEEIGRERSRGGPATEEATIKTLPIGGDNISLVSGVTIHNSSGANILPHDSQVVKQDNAMNKDKTEIASYKNIKIQEGVNLLDKTEEMGIVSNNNVVITPAFADTRTRLEKYKHFVDLNDSQISLLVEAIEAYPHLWNACEKFTDRFRAFMLKTLAEMLLFLRSESVGSVNSEREKEFLKLCDVAVQLGFEKSWVDEMRQPVVGRDPKLEHAKAQMGELLKRHDNLIEELDSIKAPIDELVKRHNHLTQELHNMKKQLRTLNDYLDVPTKCFDFL 1772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00250 1772 Coils Coil 1734 1754 - -
Vimu1g00250 1772 SUPERFAMILY L domain-like 461 1003 - -
Vimu1g00250 1772 MobiDBLite consensus disorder prediction 1319 1337 - -
Vimu1g00250 1772 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 1064 1278 - -
Vimu1g00250 1772 MobiDBLite consensus disorder prediction 1316 1337 - -
Vimu1g00250 1772 Gene3D - 305 396 IPR042197 -
Vimu1g00250 1772 SUPERFAMILY RNI-like 954 1244 - -
Vimu1g00250 1772 Coils Coil 33 53 - -
Vimu1g00250 1772 Coils Coil 1706 1726 - -
Vimu1g00250 1772 Coils Coil 72 92 - -
Vimu1g00250 1772 FunFam Probable disease resistance protein At1g61300 146 300 - -
Vimu1g00250 1772 Gene3D Ribonuclease Inhibitor 1087 1191 IPR032675 -
Vimu1g00250 1772 Gene3D Ribonuclease Inhibitor 855 944 IPR032675 -
Vimu1g00250 1772 Gene3D Ribonuclease Inhibitor 945 1086 IPR032675 -
Vimu1g00250 1772 PRINTS Disease resistance protein signature 340 354 - -
Vimu1g00250 1772 PRINTS Disease resistance protein signature 825 841 - -
Vimu1g00250 1772 PRINTS Disease resistance protein signature 247 261 - -
Vimu1g00250 1772 PRINTS Disease resistance protein signature 175 190 - -
Vimu1g00250 1772 Gene3D - 138 302 IPR027417 -
Vimu1g00250 1772 Gene3D Ribonuclease Inhibitor 479 854 IPR032675 -
Vimu1g00250 1772 MobiDBLite consensus disorder prediction 1352 1409 - -
Vimu1g00250 1772 Pfam NB-ARC domain 160 394 IPR002182 GO:0043531
Vimu1g00250 1772 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 407 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00250 Vimu-Chr1 1433553 1444206 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00250 176 582 WRKY Transcription Factor Family AT5G45050 25.057 3.84e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00250 - - vun:114195691 1885.15