Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00246 ATGCAGGTTTGTTCCACGTGGCGAGAGGTGTCGCGCTCGGATCTGCTGTGGGAGCACCTCACGAGGCGCGTCTGGCGAAGGACGTTCCGAGTGAGGGACACGTGGCACGCCGAGTACATCAACTGGCATCGGACGGCTACGAACTTCGAGACTGGAAGGCTGTCGTTTATGACTCCGCGCTTTGATCCTTCGGAGCATCGCCGGGGCTTGATCTGCCGCTGCCTCGCCCTTTCCGACACCCGCCTCGCGTGCGGCTTCGTAGACGGCACCGTGCGGGTCTTCGACCTCGAAACCTACGACCACGTCAGCACCTACCTGTCCGACCACGGCCACCTCTTCGGGCCCTACTCGCGCTCTGTCTCGGGAATCATTATCACCGACTCTGACATCACCTTCGCCAGGCTGGACGGGGACATCTACGTGGACGCTATCAACGTGCATGGGCAGAGCCAAGCGCGGCGGGTCGTGACGGGGTTCGTGATGAACAGCGGGGTCTTGGTCGCGTTCGCGGGAACCCGGCGGCGGTGGGTGGGCCTGTTCGCGGGGATAGCGGAAGGTGCTTTCCAGGTTTGGAACGCGGAGAGCGGGGAGCGCCTGTTCCTTGGGGGGACGTTAACTGATCCGGAAACGGTTCTGGGGTGGCACATGCTGACGGAGTTGGTTGACCCGGTGGCGCGGGTGCGCGTGACGGAGGATGAGTTCGTGGTGGCATGCACTGGTTTGAGGCTGATCTGTTTCAACGCGTGGAACCCGGAGGTTCTGCTGCGGGACGAGATGTCGGTGTCGGGGTTCGTGGTGAATTCGATGGACGTGAGTTCGGAGGCGTTTGTGGTGGTGGAGCGTGATGGGGTGGGAACGGTTTGGCGCGTGAGGACAATGGAGTTGATGAGCCGGTTTGAGTTGAGGAGTTCGTGGGTTCGTGGGTTGTGGGGTTGCATGAACCTTGGGTACGTGGTAACCTATTCTCCTAACCCTAGGCCATTCTTGAGGGTTTGGAACATTGAGCAAATGGAAGGACGGCTGTGTGTGAGAGTGTTCCTGCGAGCAGGAGAGGTGAATAGCATGGTGGGTGATGACAGACACGTGGCTATCTCTTCCAACAACATTAATCTATTGGATTTTGGTGTACAGAATCCTTAG 1140 0.5947 MQVCSTWREVSRSDLLWEHLTRRVWRRTFRVRDTWHAEYINWHRTATNFETGRLSFMTPRFDPSEHRRGLICRCLALSDTRLACGFVDGTVRVFDLETYDHVSTYLSDHGHLFGPYSRSVSGIIITDSDITFARLDGDIYVDAINVHGQSQARRVVTGFVMNSGVLVAFAGTRRRWVGLFAGIAEGAFQVWNAESGERLFLGGTLTDPETVLGWHMLTELVDPVARVRVTEDEFVVACTGLRLICFNAWNPEVLLRDEMSVSGFVVNSMDVSSEAFVVVERDGVGTVWRVRTMELMSRFELRSSWVRGLWGCMNLGYVVTYSPNPRPFLRVWNIEQMEGRLCVRVFLRAGEVNSMVGDDRHVAISSNNINLLDFGVQNP 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00246 379 SUPERFAMILY F-box domain 2 44 IPR036047 GO:0005515
Vimu1g00246 379 SUPERFAMILY WD40 repeat-like 72 367 IPR036322 GO:0005515
Vimu1g00246 379 Gene3D - 47 374 IPR015943 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SAP Vimu1g00246 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00246 - - gmx:100807240 539.265