Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00239 ATGGACATTCTATATGGATTTTTGTCTGGAGTTTTAAAAGATGTGGCGTGTGGGACTATTGATCAATTACGATACTCCTTTTGCTTTAATAATTTTGTTAAAGAGCTTCAAAAAGAAGAAGACAACTTGATCCAAACGATAAAGGATGTAGATGATCGTCTCATACGTGCTCGAAAACAAACCTTAGAGACTGCTGGAGTTATTCATAGATGGTTGGAGAATGCAAACATTAATTCAAATGAAGTTAATAGTTTGCTGAAAGAGACAAATAATGCCAAAAAGAGTTGTTTTTTTGGATACTGTCCAAATTGGATTTGGCGATACAGTTTAGGAAAAAAGTTGACAATTAAAAAAGTAGACCTTCAAAAGATCATTGAAGAAGGTAGACAATATATACAACTTCAACACATTGCCTCAATTCCTTCAAACACTTCTGATATTCTCACAGAAAAATCTATGAAGTTTGATAGTAGAAAATATGCTTCTAATCAACTAATGGAAGCACTGAAAGATGATGGGATTGCTATGATTGGATTGTATGGGATGGGGGGTTCTGGTAAAACCACATTAGCAATGGAAGTTAAGAAGATAGCAGAAGCTGAGCATCTTTTTGACAGTGTTATTTTCGTGCCTGTGTCTAGTACAGTAGAAGTTCCAAGGATTCAAGAAAAAATTGCAAGTTCATTGCATTATACATTTCCAGAAAATCAAGAAATGGAAAGAGCTCATCGCTTGAGCATGAGATTAACCGAGGAAAAAAAGATTCTTATGATTCTAGATGATGTGTGGGAAAAACTTGATTTTGGTCGCATAGGGATTCCCCTCTCTGAATACCATAAAGGCCGCAAGATTCTCATTACCACTAGATCTGAAGAAGTTTGTATTTCAATGGATTGTCAAAAAAAGATTTATCTACCGATCTTAACTGACGAAGAAGCATGGACTCTCTTCCAAGAGAAAGCACTTATATCTAAAGACACTCCTGAAAACATCAAACATTTGGCAATATCAATTTCAAATGAATGTAAAGGATTGCCTGTTGCCATTGTAGCTGTTGCTAGTAGCTTGAAGGGAAAAGAAAAGGTGATATGGCGTAATGCATTGAATAAATTAAGAAGTTCTAAGCCAATCAATATCGATAGGGGTTTCCGAGATCCCTATAAGTGTTTGAAATTGAGCTACGATAATCTAGATAGTGAAGAAGCTAAATCACTTTTCCTGTTGTGTTCTGTATTTCCCGAAGATTATGAGATTTCAGTGGAATGTTTAATAAGATGTGCAATAGGGTTAGGTGTGGCTGGAGAAGTTGACACATATGAAGAGGCAAGGACTGAAGTGACTGCAGCCAAAATTAAGCTTGTAAGTTCTTGTTTATTGATGGAGGCGGATAATGAATGTGTAAAAATGCATGACTTGGTTCGTGATGTAGCCCATTGGATAGCAAAGAATGAAAATAAGATGATCAAGTGTGAAGTGGAAAAGGATGTAAGTTTGGAGGAAGGTTCAATAAGATATCTATGGTGTGTGAAATTTCCAGATGGTATGGATTGTTCCAATCTTGAGTTTTTAACTATACAAACAAAATTGGAAGTATCCGATGGAATGTTTGAAAGAATGGGAAAACTTAGAGTTTTGATTATTACCAATAAAAATGACTATAGGTTGCAGTTGTCAACAACGTCTTTCAAATCATTAACAAATCTCCGTTGTCTGATCCTTCAAAAATGGAATTTGAGAGACGTCTCATTTGTAAGAGATATGAAGAAACTGCAAAGTCTTTCGTTTCATCGTTGTTCATTGCCTTCATTCCTTGACTTGCAAACTGATGTTGCAGTTACAACACTTACAAACTTGAAGTTGTTAGAGTTTAAAAGTTGTGACATTGAAAGCAATATGTTTGAAGAGATCAAAAGAATCCCATTTTTAGAAGAATTGTATATTTATGAAGACCACTGGAATGACCGAAAGGAAGAAAGTGTTAAATTCTCTAACTCATTTAGTGTCCTCCAAAAGCTGCAAAGGTATGGAATTATATTAGGATATTATTATAGATTTCAAGAGTTTTGCTCTTGTGAGAGAACTTTAGGAATTAATTATTTTGACATATCGAATGAGGTTATTAAAGGTTTGGCCAAAAAAGTAAAAGAGTTATTTGTAGGAAATATTGAGGGAGGTGCAAAAAATATAATTCCTGATATAGTTGAAATTGAAGAAGGTATGAATGAGTTGAAAGAACTGAGAATACGTGATTGTGAAGAAATAGAGTGTTTGGTTGACACTAGCAATCATTTGAGTAAGATGGGAAATATTTTCTCCAACTTACGTTATATGGAGATCTTCAAGATGAATCATCTAAAAACTTTATGGCATGGTTGTCTACCTGTCAATGGATGTTTTGAAAAATTAGAGAAGATATATATAAGCTATTGCCCACAATTAACATGTCTCTTCACGAATATCATTATTCCAACAAATGACAAAACAAAGAAAAGTGAAGATCAATTCACACATGGGCATTTGATGCCATCCAAAAATTTTCAGAATCTTCAAAAAGTGGCGTTGTTTAACTGTGGAGAATTAAAACATGTATTCTCAGCCAGTATTACAGGAGGCCTAACTCAATTGAAAGAGCTTGATATTAGAAATTGCAATATGCTAGAGCAAATAATTGAGGATGTTGTTCCACCAGCACACCATGAAGAAACAAATGAAATCGTTGAGGAAGATGTGCAGAGTACTTCAGGATCGTTTTCTCTGTCTAGCCTTACATTTCTTAACATATATTCATGTAGAAAGTTGGAGTCATTGTTTACAACATCTGTAGCTAAGACCTTGACTTCATTAGAAGAATTGTCCATAGCTAAATGTCATGGTTTGAAGCATATAGTAATTTCTGAAAGAGTGAAAGGAAATAAAAAGGAAAACATGGTTGAAGATGAGCATGAATTTGAAAGTGATCTTTCAATGTTCTCAAATTTGAAAAGGATGGTTATTCGGTATTGTGACTCGTTGCAAGATATATTCACAACACCTGTCAAGGGGTGTTTTGAAAAATTAGAGAAGATATATATAGAAGATTGCCCACAATTAACATATCTCTTCACATATGCTCAAGGTATGAGAGAGTTGAAAATATTAGACATTACCAATTGTTCGAAATTGAAGCATATAGTAGCTTATCATGATGATAAAACAAAGAAAAGTGAAGATCAATTTACAAATGGACATTCAATGCAATCCAAAATTTTCCAGAATCTTCAACAAGTGTGGATATATAGATGTGGAGAATTAAAACATGTATTCTCAGCCAATATCACAGCAGGCCTAACTCAATTGAAAATGCTTGATATCAAAAGTTGCAATATGCTAGAACAAATAATTGAGGATGTTCTTCCACATTGGAATAACTCAGGATCGTTTTCTCTGTCTAGCCTCGCAGTTCTTAGCATAGAATCATGTAGAAAGTTGGAGTCATTGTTTACGATATCTGTAGCTAAGACCTTGACTTCATTGGAAGAATTGAAGATTATTCACTGTCATGGTTTGAAGCATATAATTGAAGAGGATTTGGAGGATAAGAAGATTTCACCACAATTATGCTTTCCCAAACTACAATCATTGATTATTCAACAATGCCATAAGTTGAAATATTTCACATCTCTATTTGCATCCAATGATCTTTCCAACTTGAAAATTCTAATCATAATGGAAGCTACTGAACTACAGGAGTTTATTGCATGCGAACACGATGAGACAGGAAATACCAAAGTTGAACTTTCGCAGCTGAAACTTATAATATTTATAAATCTTTCAAATTTTCACCAAAAGACTATATTTTCAAATGTAAAGCATCGCATTATCCGCAATTGTCCAAAACTCTCTTTGACTTCAACAACTACTCCTCAACAGCTCCAACAAAATCTTCCTTTGGAAGGTTTGGAAAATTTTAGAATTCCTGATTGGCAAATTTCGTCATGGATGGATGAAATAAAGAAATTAGATGAAGTTTCTAGAAGCAACAATTCTACTGAATTGCCTTCTTCACAGATCAATGAAAAATTAGATAAGAATGTCACTGAGAAAGATTATGGTTCGAAGGAAGTGGCTCCTGCAACTTCAATAAATGCAGAGGTGGATGGAAAATCTAATCGTGAAACATATTCAAAGGAGTTGGTGGATGCAAAATCAACGACTAGATCACACTTTACAGACCAACAAAATCAATTTGGACAAACTCAAAGTAACATCAAAATGTCCCAGCAGGATTGGGATCCTACGCCAAAAAACACTTCTCCCCTCCAAATGAACCGTGAAGATCCATCAACATCTCAAATTAAACCATTTTCTTCACAAGTCAATGATAACAATCAATCCATGTTGGAGAGCAGAGTTGAAATGGTAAGTCAACATAAAGAAATTGAAACCAAAACACTAGAGTCGGAAATACAAGAGTTCCAAAAAATAGACAGAAAAGGTGATATGACATCAGACCCACAAGCTATGGAGCAAAACTTTCCAGTCATTTCTTCTCCAAACATTACTGAGCGTACTGATAAAATAGTGGCAAACAACCTTGGAAAAACTACGACATCAGATAAACTTGCAATACCAACTTCTGCTTCAGAGGAAATAGGAAGAGAAAGGAGCGGTGGTGGAGCTACAACAGAGGGAGCTCCAATTAAAACCTTGTCAATTGGTGGAGATAACATTAACTTGGTTAGTGGTGTTACTATTTACAAGTCAAGCAGTGCAAATATACTTATACAAGATTCCGAGTTTGTTAAACAAGATAATGAGATGAATGAAGACAAGACAGAAATAGCACCATATAAAAATATCAAAATCCAAGAAGGGGTGAACTTGTTGAATAAAACAGAGGGAGTAGGAATTGTTTCCAATAATGACATTGTGGTTACTCCAGCTTCTACAGATACTCGTACAAGATTGGAAAAGTATAAGCACTTTGTTGATCTGAATGATTCACAAATTTCTCTGCTAGTGGAGGCGATAGAAGCATACCCTCATCTTTGGAATGCATGTGAGAAGTTCACTGATCGCTTTCGAGCTTGGATGTTGAAAACATTGGCAGATATGTTGTTGTTCCTTCGAAGTGAAAGTGTTGGTAGTATTAATCCTCATAGAGAAAAGGAGTTCCTTAAACTATGTGATGAAGCTGTTCAACTTGGATTTGAGAGGTCTTGGGTTGATGAAATGCGTCAACGTGTTTTGGGAAGGGATCCTAAGTTGGACCATGCAAAGGTGCGAATCAATGAGCTTCTTAAGAGACATGATCATTTAACTCGGGAACTAGACAACGTAAAGAAAGAACTTAGGAGTCTTAATGACTTTCTTGATGCCCAAGCAAAATGTTTCGACTTTCTGTGA 5385 0.351 MDILYGFLSGVLKDVACGTIDQLRYSFCFNNFVKELQKEEDNLIQTIKDVDDRLIRARKQTLETAGVIHRWLENANINSNEVNSLLKETNNAKKSCFFGYCPNWIWRYSLGKKLTIKKVDLQKIIEEGRQYIQLQHIASIPSNTSDILTEKSMKFDSRKYASNQLMEALKDDGIAMIGLYGMGGSGKTTLAMEVKKIAEAEHLFDSVIFVPVSSTVEVPRIQEKIASSLHYTFPENQEMERAHRLSMRLTEEKKILMILDDVWEKLDFGRIGIPLSEYHKGRKILITTRSEEVCISMDCQKKIYLPILTDEEAWTLFQEKALISKDTPENIKHLAISISNECKGLPVAIVAVASSLKGKEKVIWRNALNKLRSSKPINIDRGFRDPYKCLKLSYDNLDSEEAKSLFLLCSVFPEDYEISVECLIRCAIGLGVAGEVDTYEEARTEVTAAKIKLVSSCLLMEADNECVKMHDLVRDVAHWIAKNENKMIKCEVEKDVSLEEGSIRYLWCVKFPDGMDCSNLEFLTIQTKLEVSDGMFERMGKLRVLIITNKNDYRLQLSTTSFKSLTNLRCLILQKWNLRDVSFVRDMKKLQSLSFHRCSLPSFLDLQTDVAVTTLTNLKLLEFKSCDIESNMFEEIKRIPFLEELYIYEDHWNDRKEESVKFSNSFSVLQKLQRYGIILGYYYRFQEFCSCERTLGINYFDISNEVIKGLAKKVKELFVGNIEGGAKNIIPDIVEIEEGMNELKELRIRDCEEIECLVDTSNHLSKMGNIFSNLRYMEIFKMNHLKTLWHGCLPVNGCFEKLEKIYISYCPQLTCLFTNIIIPTNDKTKKSEDQFTHGHLMPSKNFQNLQKVALFNCGELKHVFSASITGGLTQLKELDIRNCNMLEQIIEDVVPPAHHEETNEIVEEDVQSTSGSFSLSSLTFLNIYSCRKLESLFTTSVAKTLTSLEELSIAKCHGLKHIVISERVKGNKKENMVEDEHEFESDLSMFSNLKRMVIRYCDSLQDIFTTPVKGCFEKLEKIYIEDCPQLTYLFTYAQGMRELKILDITNCSKLKHIVAYHDDKTKKSEDQFTNGHSMQSKIFQNLQQVWIYRCGELKHVFSANITAGLTQLKMLDIKSCNMLEQIIEDVLPHWNNSGSFSLSSLAVLSIESCRKLESLFTISVAKTLTSLEELKIIHCHGLKHIIEEDLEDKKISPQLCFPKLQSLIIQQCHKLKYFTSLFASNDLSNLKILIIMEATELQEFIACEHDETGNTKVELSQLKLIIFINLSNFHQKTIFSNVKHRIIRNCPKLSLTSTTTPQQLQQNLPLEGLENFRIPDWQISSWMDEIKKLDEVSRSNNSTELPSSQINEKLDKNVTEKDYGSKEVAPATSINAEVDGKSNRETYSKELVDAKSTTRSHFTDQQNQFGQTQSNIKMSQQDWDPTPKNTSPLQMNREDPSTSQIKPFSSQVNDNNQSMLESRVEMVSQHKEIETKTLESEIQEFQKIDRKGDMTSDPQAMEQNFPVISSPNITERTDKIVANNLGKTTTSDKLAIPTSASEEIGRERSGGGATTEGAPIKTLSIGGDNINLVSGVTIYKSSSANILIQDSEFVKQDNEMNEDKTEIAPYKNIKIQEGVNLLNKTEGVGIVSNNDIVVTPASTDTRTRLEKYKHFVDLNDSQISLLVEAIEAYPHLWNACEKFTDRFRAWMLKTLADMLLFLRSESVGSINPHREKEFLKLCDEAVQLGFERSWVDEMRQRVLGRDPKLDHAKVRINELLKRHDHLTRELDNVKKELRSLNDFLDAQAKCFDFL 1794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00239 1794 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 993 1297 - -
Vimu1g00239 1794 Coils Coil 1749 1783 - -
Vimu1g00239 1794 SUPERFAMILY L domain-like 987 1292 - -
Vimu1g00239 1794 Coils Coil 33 53 - -
Vimu1g00239 1794 SUPERFAMILY L domain-like 468 1058 - -
Vimu1g00239 1794 Coils Coil 72 92 - -
Vimu1g00239 1794 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 409 IPR027417 -
Vimu1g00239 1794 MobiDBLite consensus disorder prediction 1337 1367 - -
Vimu1g00239 1794 MobiDBLite consensus disorder prediction 1339 1353 - -
Vimu1g00239 1794 FunFam Probable disease resistance protein At1g61300 147 302 - -
Vimu1g00239 1794 Pfam NB-ARC domain 161 395 IPR002182 GO:0043531
Vimu1g00239 1794 Gene3D Ribonuclease Inhibitor 970 1070 IPR032675 -
Vimu1g00239 1794 Gene3D Ribonuclease Inhibitor 1071 1196 IPR032675 -
Vimu1g00239 1794 Gene3D Ribonuclease Inhibitor 696 969 IPR032675 -
Vimu1g00239 1794 MobiDBLite consensus disorder prediction 1398 1453 - -
Vimu1g00239 1794 MobiDBLite consensus disorder prediction 1396 1453 - -
Vimu1g00239 1794 Gene3D - 136 304 IPR027417 -
Vimu1g00239 1794 Gene3D Ribonuclease Inhibitor 491 676 IPR032675 -
Vimu1g00239 1794 PRINTS Disease resistance protein signature 176 191 - -
Vimu1g00239 1794 PRINTS Disease resistance protein signature 870 886 - -
Vimu1g00239 1794 PRINTS Disease resistance protein signature 249 263 - -
Vimu1g00239 1794 PRINTS Disease resistance protein signature 342 356 - -
Vimu1g00239 1794 Gene3D - 307 398 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00239 Vimu-Chr1 1319154 1326178 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00239 174 506 WRKY Transcription Factor Family AT5G45050 25.723 2.62e-09 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00239 - - vun:114195691 1974.13