Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00233 ATGTCCAAAGAAAGTATGTCCTCAGCTGGTGGTGATGGTGGTGCCAGCATTGAACTTGGCGCTGCCTTACTTGGTTCTACTACCCTCACCAAGGGGAAGTACAACAGGATATGGCGTAGGAGTTTATACATAAGGTTCCTCATCTCCACGAAGAAACCATCAACTTCCAGCCATGACTCTCCACCTTCACCATCTCCTGCCAGAACCTTCTCTTCCAAATCCTATGTCACACTTGATATAGAAGAGAGCATTAGCAGTGATACTGATGGAATTGTGAAGGACCAGGGCCTGAATTCTCTTCCCGGGCTTGGTGGTCAACGTCAATACACACAGGGGCACGGTGCTGTTGATGAGGGGAACCCCACTGTATCGTTACCAGTTTTTGGAATAGACTTTTCTAAGTCTTTATTGAATAGCTACAAATGCTACCGCTGCACAATCTTGATGCTGTTGGTCTCAGCTGGGTTGTCATTCACCATAGACTTCAAGCAGGAGGGACCAAAACATGGTTGGCATGATGGTGTTGCTATATTATTTGCTCTTGTCCTGCTGGTTCTGGGAAAACCAGTTGCAAACTTTTTTTGTGAGAGGAAAAAGTTGAAATTGAAGGAGAGAAAGCAGGAGTTGGAATTCAGAGTGAAACGAGGTGAAGAGTCCCTAATGGTTCCCGTATCTGATATTGTGGTGGGAGACACAGTGTGCCTGTGGCCAGGCGATGAGGTTCCAGCAGATGGTGAGCTCGAAAGTGATGGCATCCTTGTTCTGGTTGAGCTTGAGGAAATAAAAAGCAAACAGAAGGGGCAGAATTCGTTTGTTACATCTGGTTCAAAGGTGATCGGGGGCCAGGGAAGGATGTTGGTAACATCAGTTGGAATCAAAACCAGTTTGGCTAAGATAGGTACCTGTAATTCTGAAAGGAGGGGTTTGTTGGAAAGACAAATTGAGAAGCCAATTTCTTACATTGACATGGCTGCACTTTCTATCTCTGTACTGGTTGCATTTGTGGTGTTAATTCGCCTAATTTGTGGAAAAGACGGGAGCAATGCAGGCTTGCCAGAAATGAGAGGGAAGGTCTCAATTGGCCTGTTTATGCATGTCCTTGAGAGAACTTTTCTAAGACCCCAAGGAAGGGTTTCCATTTTAACAGGTCTTGTTACTGTTGCAATACTTTGCGTTCAGCATGGAATGCCATTTGTGGTTACCATTTCTCTTAAGTACCAGATTGAAAAGGAAGTACGAAACCAAGATGTAGTTCTTAATGATTTGTCCGCTTGTACGACAATGGGGTTGGTAACTGTGATCTGTATTGATGTATCAGGGGAACTCATATCTAAACCAATGGAAGTTCGAAGAATATGGATGGGAGAGAAAGATATCGGCATGGTCGAGGGATCTGAAACAGAAAAACCCGTGCTTGACATGCTTAAACTAGGGGTTGGTTTATCAGTCCTTGCACCAGAGATTTATCTTTGCCCTGTGTTCAATTCACTTGTTTGTTGGGCAGAAACAACATGGGAAATGAGCATGAGATCTTTCACAGAAGAAAAATTTGACATTCTTAAGCACATCAAATTGAATTCTGGCAAAGAAGTCAGTGGAGTTTTGGTGAGAAAAATTGGGGACAGTGAAGTTCTGCACTTGCACTGGAGTGGAGCTGCATCCGCAATATTGGAGATGTGTTCGAGATACCATGACAGTAAAGGGAATTGCCACGCCATGGAAAATCAAAAAATCAAATTTGGGCAGGTGATTAAAGAGATGGAGGATAGTGGTCTTAGGTCAATTGCTTTTGCTTATAAACAAACAGATGGAGAAGAACTTGAGCAAGAAGAACTGATCTTGTCTGGACTGATAGGCCTGAAAGAAACTAGTCAAGAATCCATAAAATTAGCTTTGGAAAATTTCAGAAATGCTGCAAATGTACAGATCAAACTGGTCTCAGAGGATGGCATCGAGAAATTGGAAGGCATTGCTCGTGAACTAGGACTAGAACATGATGTTGTGCTAGAAGGTAAACAACTTCAAGATTTGAATGGGGAAGCTAGATTGGTCGAAGTGGATCGAGCCCATGTAATGGCAAGATTCCTTCCTGAAGACAAACTTCTCATGATACAGTGCTTGCAAGAGAAAGGCAAGGTGGTTGCATTCATTGGGACAAGGTTGAGAACTAGTCTTACTTCAGTTCTAAAAGTAGCTGACGTGGGGATAGTGCTTGATTCTTTCAGCACAAGAGTGGATAGAGATAGTTGTGACATATCTATCAAATGCTTCAGTGCATTGAAACACGTTGTGATAGCTGGCAGAAGTAAATACCACAATATTCAGAAGTTCATTCAACTTCAGCTGACATGTACCATATCAGGATTAGTCATAACCTTCATCACAGCCTGTACTGGAGATTCCCCGCTTGCACCGTTCCAGTTGATTTGGGTGAATGTTGTTGTGTGCATTCTAGGTGGCCTAATGATGGTAATGAAGTTAACCAACGAGGAACAACTTGCTAAACAACCATCTGATCACAGGAACCAAAATATTATAGCCAAAGAAATCTGGAAAAGCATTGCTATTCAAGTACTATATCAGACTTCTGTATCAATGATACTTGAGTTTGGGGGACATGTTACTGACTGGGAGAAAAAAGTTAGGGAAACCATGATCTTTAATACCTTCTTATTGTGCCAGATAGTCAATCTGCTCAACACCATGAAGTTGTTGAGAAAGGAAGTTCTTGTTCAGAGCTTCTATTTCTTGGGGGCCTTAGTTATCTGTTTTCTCATGCAAGTGGTGGTGATTGAGTATGCTAAAGGCCTGTCAGATTGCATGCACCTGAATGTTACGAGATGGGGTATCTGTGTCATGATTGGTGCTCTTGCATGGGTTTTTGAGTGGAGCATGAAGAATATTCTTCCAGTTATTCTGAATCCCAGCACCAATTATTCTTCAGAATTCAATACTTCACCTTCTTTCTTTCTTTCTCCATCTTTTCCATTTCTGATGCTACTTTTGTTCCCCATAGGACTGATTTTTAGTCAAATGGGAATGAACATGACACTTAGTTAG 3060 0.4229 MSKESMSSAGGDGGASIELGAALLGSTTLTKGKYNRIWRRSLYIRFLISTKKPSTSSHDSPPSPSPARTFSSKSYVTLDIEESISSDTDGIVKDQGLNSLPGLGGQRQYTQGHGAVDEGNPTVSLPVFGIDFSKSLLNSYKCYRCTILMLLVSAGLSFTIDFKQEGPKHGWHDGVAILFALVLLVLGKPVANFFCERKKLKLKERKQELEFRVKRGEESLMVPVSDIVVGDTVCLWPGDEVPADGELESDGILVLVELEEIKSKQKGQNSFVTSGSKVIGGQGRMLVTSVGIKTSLAKIGTCNSERRGLLERQIEKPISYIDMAALSISVLVAFVVLIRLICGKDGSNAGLPEMRGKVSIGLFMHVLERTFLRPQGRVSILTGLVTVAILCVQHGMPFVVTISLKYQIEKEVRNQDVVLNDLSACTTMGLVTVICIDVSGELISKPMEVRRIWMGEKDIGMVEGSETEKPVLDMLKLGVGLSVLAPEIYLCPVFNSLVCWAETTWEMSMRSFTEEKFDILKHIKLNSGKEVSGVLVRKIGDSEVLHLHWSGAASAILEMCSRYHDSKGNCHAMENQKIKFGQVIKEMEDSGLRSIAFAYKQTDGEELEQEELILSGLIGLKETSQESIKLALENFRNAANVQIKLVSEDGIEKLEGIARELGLEHDVVLEGKQLQDLNGEARLVEVDRAHVMARFLPEDKLLMIQCLQEKGKVVAFIGTRLRTSLTSVLKVADVGIVLDSFSTRVDRDSCDISIKCFSALKHVVIAGRSKYHNIQKFIQLQLTCTISGLVITFITACTGDSPLAPFQLIWVNVVVCILGGLMMVMKLTNEEQLAKQPSDHRNQNIIAKEIWKSIAIQVLYQTSVSMILEFGGHVTDWEKKVRETMIFNTFLLCQIVNLLNTMKLLRKEVLVQSFYFLGALVICFLMQVVVIEYAKGLSDCMHLNVTRWGICVMIGALAWVFEWSMKNILPVILNPSTNYSSEFNTSPSFFLSPSFPFLMLLLFPIGLIFSQMGMNMTLS 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00233 1019 Gene3D - 371 431 - -
Vimu1g00233 1019 SUPERFAMILY Calcium ATPase, transduction domain A 210 299 IPR008250 -
Vimu1g00233 1019 Gene3D - 490 623 IPR023299 GO:0000166
Vimu1g00233 1019 FunFam - 757 976 - -
Vimu1g00233 1019 SUPERFAMILY Calcium ATPase, transmembrane domain M 146 969 IPR023298 -
Vimu1g00233 1019 Gene3D - 432 444 IPR023214 -
Vimu1g00233 1019 Gene3D - 731 970 - -
Vimu1g00233 1019 Gene3D - 445 460 IPR023299 GO:0000166
Vimu1g00233 1019 Gene3D - 195 302 - -
Vimu1g00233 1019 Pfam Cation transporting ATPase, C-terminus 801 965 IPR006068 -
Vimu1g00233 1019 SUPERFAMILY HAD-like 433 819 IPR036412 -
Vimu1g00233 1019 PANTHER CATION TRANSPORTING ATPASE 142 968 - -
Vimu1g00233 1019 MobiDBLite consensus disorder prediction 52 71 - -
Vimu1g00233 1019 Pfam E1-E2 ATPase 211 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00233 Vimu-Chr1 1294560 1297794 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00233 89 998 Primary Pumps ATPases AT3G63380 32.735 3.96e-129 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00233 K01537 - gmx:102661547 1254.97