Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00232 ATGGCTACCACTGCTTTCCAGCAATCAGCATTCGCTGGTCAAACAGCTCTGAAGCAGGTCAATGAGTTCGTCCGCAAAACCAGTGGCTCCGGCAAAGGTCGCACCAACATGCGCCGTACCGTCAAGGATGTTCCTCAGAGCATTTGGTCCTCTCTACATTTCTCGCGAACTTTCCCTCGGAATCGAAGCCTCGTTGTCAAAGCCTCTTCTTCTTCTTCTTCCGACGACATTTCCCGGAGCAGGAGACGCTTCCTCGCCGAAACCGCCGCAATATCGGTTTCGCTTCCTCACTTTCCGGCGAGGGCCGAAGACACGCTCTCGGAGTGGGAGAGAGTGTACCTCCCTATCGACCCCGGCGTCGTGCTTCTCGACATTGCTTTTGTCCCCGACGACCCCAACCACGGTTTTCTTCTCGGGACGAGGCAAACAATTCTGGAGACGAAGGACGGAGGAAACACTTGGGCTGCGCGTTCGATTCCCTCTGCCGAAGATGAAGATTTCAACTATCGCTTTAATTCTATTAGTTTCAAGGGGAAGGAAGGGTGGATAGTTGGAAAACCTGCGATTCTTTTGTACACTGCTGATGCTGGAGAAAGCTGGGAGAGGATACCTCTCAGTGCTGAACTTCCAGGGGATATGGTATACATAAAAGCGACTGGTGAGAAGAGTGCAGAGATGGTGACTGATGAAGGTGCAATATACGTTACTGCTAACAGGGGTTACAACTGGAGAGCTGCTGTTCAGGAAACTGTGTCAGCTACTCTTAACAGAACAGTTTCTAGTGGTATTAGTGGTGCAAGCTATTACACCGGGACTTTCAATACTGTCAATCGCTCTCCAGATGGAAGGTATGTTGCAGTCTCAAGTCGAGGCAACTTCTACTTAACCTGGGAGCCTGGTCAGCCATTCTGGCAGCCACATAATAGAGCAGTTGCCAGAAGAATACAGAACATGGGATGGAGAGCTGACGGTGGTCTGTGGCTTCTTGTTCGTGGAGGTGGTCTTTATCTCAGCAAGGGCACTGGGTTAACTGAAGAATTTGAGGAGGTTCCTGTCCAAAGCAGGGGTTTTGGCATTCTTGATGTTGGATATCGTTCAACGGATGAGGCTTGGGCAGCAGGAGGAAGTGGTATTCTTTTGAGAACTACTAATGGTGGCAAGTCATGGATCCGCGACAAAGCTGCTGACAACATTGCTGCAAATTTATACTCAGTGAAGTTCATTGATGACAAGAAGGGATTTGTATTGGGGAATGATGGAGTTTTGCTTCGCTTCCTTGGGTAG 1284 0.4969 MATTAFQQSAFAGQTALKQVNEFVRKTSGSGKGRTNMRRTVKDVPQSIWSSLHFSRTFPRNRSLVVKASSSSSSDDISRSRRRFLAETAAISVSLPHFPARAEDTLSEWERVYLPIDPGVVLLDIAFVPDDPNHGFLLGTRQTILETKDGGNTWAARSIPSAEDEDFNYRFNSISFKGKEGWIVGKPAILLYTADAGESWERIPLSAELPGDMVYIKATGEKSAEMVTDEGAIYVTANRGYNWRAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQPFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLYLSKGTGLTEEFEEVPVQSRGFGILDVGYRSTDEAWAAGGSGILLRTTNGGKSWIRDKAADNIAANLYSVKFIDDKKGFVLGNDGVLLRFLG 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00232 427 Gene3D - 170 391 IPR015943 GO:0005515
Vimu1g00232 427 Pfam Photosynthesis system II assembly factor YCF48 105 425 IPR028203 -
Vimu1g00232 427 PANTHER PHOTOSYSTEM II STABILITY/ASSEMBLY FACTOR HCF136, CHLOROPLASTIC 57 427 - -
Vimu1g00232 427 SUPERFAMILY Oligoxyloglucan reducing end-specific cellobiohydrolase 108 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00232 Vimu-Chr1 1286237 1290058 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00232 1 49 Chloroplast and Mitochondria Gene Families AT2G05100 69.388 4.61e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00232 - - vra:106763078 829.32