Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00231 ATGTCTGATTTTTCATTGGGTGTGATTGAACACAGGTATGGCCCTGACCGTCCCAAGTACTTGGGTCCATTCTCTGAGCAGATTCCATCATACCTGACCGGTGAATTCCCTGGTGACTACGGATGGGACACAGCTGGATTATCAGCTGACCCTGAAACCTTTGCCAGGAACCGTGAATTGGAGGTGATTCACAGCAGATGGGCCATGCTCGGTGCTCTAGGATGCACCTTCCCAGAGATTCTTGAGAAGAATGGTGTGAAATTCGGTGAGGCAGTGTGGTTCAAGGCTGGTGCACAGATCTTCTCTGAGGGAGGACTTGACTATTTGGGGAACCCAAATCTGATCCATGCTCAGAGCATTCTTGCCATCTGGGCTGTGCAGGTTGTGCTTATGGGGTTTGTTGAAGGTTACAGAGTCGGTGGAGGACCTCTTGGTGAAGGGTTAGACCCTATCTACCCTGGTGGTGCCTTTGACCCTCTTGGTCTTGCTGATGACCCTGATGCATTTGCTGAGTTGAAGGTGAAGGAACTCAAGAATGGTCGCTTGGCTATGTTCTCCATGTTTGGTTTCTTTGTTCAGGCCATTGTCACTGGCAAGGGCCCTATTCAGAACCTATACGACCATGTTGCTGACCCTGTTGCCAACAATGCTTGGGCTTATGCCACCAACTTCGTCCCTGGACAATGA 687 0.5022 MSDFSLGVIEHRYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDPIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAYATNFVPGQ 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00231 228 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 11 227 IPR001344 GO:0009765|GO:0016020
Vimu1g00231 228 SUPERFAMILY Chlorophyll a-b binding protein 12 225 - -
Vimu1g00231 228 Pfam Chlorophyll A-B binding protein 29 194 IPR022796 -
Vimu1g00231 228 Gene3D Chlorophyll a/b binding protein domain 19 221 - -
Vimu1g00231 228 FunFam Chlorophyll a-b binding protein, chloroplastic 19 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00231 Vimu-Chr1 1282688 1283374 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00231 13 228 Chloroplast and Mitochondria Gene Families AT3G27690 91.667 4.74e-152 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00231 K08913 - gmx:100815789 453.366