Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00220 ATGTCTGTGAATCGAAAGCCTCCTGCTTCGAATGGTAGATTACCATCGAATATGAAATCTTGGAAGGTGAACGAGCCTCTGCATGGGTCTAATTCTCCCAGGACATGTAGGAGAAAACCCTTCCTCCTTTGGTTCTTTGGCTTTGTTGCCATAGGGAGTATTTGGTTCATCTTGAGTTTCAACAGTAACTATTTAGTGAACAAGGAGAATGAAGCAATTTGTGAGAAGAGAGCAAGAGTCTTGCTACAACGGTACAATGTTAGTAGGGAACAGATTTATGCTTTGGCATCCTGGTTTCCTGGATCAGATCAGATTCTATTCAACTGTATTGATGAAAGAAGACTTCGGATGCTGTTAAGCAGCAGCATGGTAAGCACTCCACAGTTAACGTGTCCAGAGAATCAGGAACTAAGAAAGGAGCATATACGTGTAATGGACATTGTAGAACCTATCGAGCAATGTCCAATTCTCAATGATTATGTCCAGGCAAGGCTTGAATTATCATTCCTATTAAAAAATTATGTATCATTGGCCTCGGGTACTTCACTTTCGACTGATTTTGTTAGTTCTTTCCTCCGTGGAAAGAACATTGTGCAACCGTGGGAAATGAGGGTATCTGCAATTTGGGGTCATGTGGATTCATCTAATTTAACTAAAGGATTCTGGTGGGTCCTCATTGGAATTATAATGTCCTACTTCTGTTTACGGAGGAGTCAAAAGCAGAAGCTGGCTCAGGGGCATCCACCTGCACAACAAAAGCGGCCGAAGCATTTTCCACGGGGTCCATCAAGGGGTGCTGGGAGGTGGAGGAAAAAATTACTAGTTATATTTGTGTCACTTGGAATAATTGGGTCCTTTTGGTTATTTTGGCACCTAAATATGGACATCATGCAGAGAAGAGAAGAAATGCTAACAAACATGTGTGATGAGAGAGCCCGAATGCTGCAAGATCAGTTTAATGTGAGCATGAACCATGTTCATGCTCTGGCTATCCTTGTATCTACATTTCACCATGGTAAACATCCTTCTGCAATTGATCAGCCTAAAATAGAATTTCAGGCTTCTCCGTTTCTTTCATTGCATTATGTGAAAACAACAAAAGAAAAGAGAAAAGTAAGGAAAAATAACACGGAAGCTTCTGTTTCACTGCAGAAAATTTTTGGAGAATATACAGAGAGTACAGCATTTGAAAGACCACTTACTAGTGGTGTTGCTTATGCTTTGAAAGTTCTTCATTCTGATAGGATGCATTTTGAGAAGCAGCATGGGTGGACAATTAAGAAAATGGAAACAGAGAATGAGGCATTAGTCCAAGATTGTATTCCTGGAAATTTGGATCCAGCACCCGTTCAAGATGAATATGCACCAGTGATATTTGCTCAAGAAACGGTTTCCCATATTGTATCTATTGACATGATGTCAGGGAAGGAAGACCGTGACAATATTTTGCGAGCAAGGGCATCTGGAAAGGGGGTTCTCACATCCCCTTTTAAACTACTAAAGTCCAATCACTTGGGTGTTGTACTTACATTTGCGGTCTATAATTCTAATCTTCCTTTAGATGCTACACCAGAGCAGCGTATTGAAGCAACTGTGGGATATCTGGGTGCAAGTTATGATGTTCCGTCATTGGTGGACAAGCTTCTGCACCAACTTGCCAGCAAGCAAACCATTGTTGTTAATGTTTATGACACAACTGAGGCATCTGCACCTATCACAATGTATGGTACTGATGTTACTGACACTGGCCTACTACATGTAAGCAGGCTAGATTTCGGGGATCCGCTACGAAAACATGAGATGCACTGCAGGTTCAAGCAGAGGCCTCCACTACCTTGGACTGCAATCAATGCATCAGGGGGGGTGTTTGTTATTACTTTGCTGGTCGGTCATATTTTTTATGCAGCAATAAATAGAATAATAAAAGTTGAGGATGGCTATCGTGTAATGAGTGAGCTGAAAAGCCGTGCTGAGGCTGCAGATGTGGCAAAATCCCAGTTTCTTGCTACAGTTTCACATGAGATAAGGACTCCAATGAACGGTGTTTTAGGCATGCTGCAAATGTTGATGGACACTGAGCTTGATAAAAAACAGATGGATTATGCCCAAACTGCACATGATAGTGGTAAAGATCTCATATCAGTCATAAATGAGGTTCTTGATCAGGCTAAGATTGAGGCTGGAAAGCTTGAACTTGAAGCTGTAGCTTTTGACCCACGTGCTATTCTGGATGAAGTTTTATCTCCTTTCTCTGAAAAATCTAAAGGAGTAGAGCTGGCTGTTTATGCATCCAATCAAGTACCTCAAGTTGTCATTGGTGATCCTAAACGATTCCGGCAAGTAATTACAAATCTTGTCAGCAATTCAGTCAAGTTCAATCATGATAAAGGACATGTGTTTGTTTCTCTTCATCTGGCAAACGAAGTGAAGAATCCACTTCATGTTATGGATGCAGTGCTGAGTGAAGGCTTAAATGCCAATCAAGATGTATCAAACAGAACATACGATACATTAAGCGGGTTTCCTGTATGCAACAAATGGAAAAGTTGGGCAAATTTTGAAAAGTTAAGTAGCGTAGGTGATCCTGAAAATTTTCAATTATTAGTAATAGTTGAAGACACAGGTACAGGAATTCCTACAGATGCACAAAGCCGCATATTCACGCCTTTTATGCAGGCTGATAGTTCCCCCTCCCGAACATATGGTGGAACTGGAATAGGACTGAGCATTAGTAAGTGCCTAGTTGACCTCATGGGAGGAGAAATTGGATTTGTAAGTGAGCCTGGAATTGGAAGTACTTTTTCCTTTACTGGAACTTTCAGAAAAGGAGAAAGCACGTCTCTGGATTCAATGTGGCAGAATAATAGTTTTGGTTCAGAGTTCCAAGGATTGAGAGCATTAGTGGTAGATAGAAGAAAAATCCGAGCTGAAGTCACAAAATATCATCTGCAGAGATTGGGAATGTCTGTGGATATAACTAATAGTCTGAATTCTCAATGCTCTTGTCTATCTAGTACTTGTGACATGAGTATGTCAAGCCAGTTGGCCATGATTTTGATAGACAAGGATGCTTGGGATAAAGAATGTCTTATCTTATGCAAAATCAGGAAGCTTAGACAGAATGGCATCAAAAGGGATCCAATAGACTTACCGAAGATTTTTCTCCTGGACAGCCACCCTAGAACCAACGAACATGATGAGCTAAAGTCAGTTGGTATCATAGATGATGTACTGATGAAGCCTCTTTGGCTTAGTTCTTTGGTTCACTCTTACAGAGAATCCCTTGGTGCTGAAAAAAATCAAGTACAAAGGAAGAAAGTATCCAAACTTGGGAGTTTATTAATGCACAAACAAATTTTGGTTGTTGATGATAATGCAGTGAACAGAAGAGTTGCAAAAGGTTTTCTACAGAAGTATGGTGCAAAAGTTACTTCTGTGGAGAGTGGCATGGCTGCTCTAAAGGTGCTTAAACTGCCACATAGTTTTGATGCTTGTTTCATGGATCTCCAAATGCCAGAAATGGATGGTTTTGAAGCAACAAGGGAAATCCGCCTAATGGAGAGCGAGGTAAATGAGAAAATTGCGTGTGGACAAGCATCTGCAGAGATGTTTGGTAACATCTCATATTGGCACATTCCAGTACTAGCAATGACAGCAGATGCAACTCAAAGTTCAAATGAAGAGTGCAGAAATTGCGGAATGGATGACTATGTGACAAAGCCATTTGAAGAAGAGCAGCTCTATATGGCAATGACACGTTTCTTCCAGCCAGATTCATAG 3780 0.4085 MSVNRKPPASNGRLPSNMKSWKVNEPLHGSNSPRTCRRKPFLLWFFGFVAIGSIWFILSFNSNYLVNKENEAICEKRARVLLQRYNVSREQIYALASWFPGSDQILFNCIDERRLRMLLSSSMVSTPQLTCPENQELRKEHIRVMDIVEPIEQCPILNDYVQARLELSFLLKNYVSLASGTSLSTDFVSSFLRGKNIVQPWEMRVSAIWGHVDSSNLTKGFWWVLIGIIMSYFCLRRSQKQKLAQGHPPAQQKRPKHFPRGPSRGAGRWRKKLLVIFVSLGIIGSFWLFWHLNMDIMQRREEMLTNMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAIDQPKIEFQASPFLSLHYVKTTKEKRKVRKNNTEASVSLQKIFGEYTESTAFERPLTSGVAYALKVLHSDRMHFEKQHGWTIKKMETENEALVQDCIPGNLDPAPVQDEYAPVIFAQETVSHIVSIDMMSGKEDRDNILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNSNLPLDATPEQRIEATVGYLGASYDVPSLVDKLLHQLASKQTIVVNVYDTTEASAPITMYGTDVTDTGLLHVSRLDFGDPLRKHEMHCRFKQRPPLPWTAINASGGVFVITLLVGHIFYAAINRIIKVEDGYRVMSELKSRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTELDKKQMDYAQTAHDSGKDLISVINEVLDQAKIEAGKLELEAVAFDPRAILDEVLSPFSEKSKGVELAVYASNQVPQVVIGDPKRFRQVITNLVSNSVKFNHDKGHVFVSLHLANEVKNPLHVMDAVLSEGLNANQDVSNRTYDTLSGFPVCNKWKSWANFEKLSSVGDPENFQLLVIVEDTGTGIPTDAQSRIFTPFMQADSSPSRTYGGTGIGLSISKCLVDLMGGEIGFVSEPGIGSTFSFTGTFRKGESTSLDSMWQNNSFGSEFQGLRALVVDRRKIRAEVTKYHLQRLGMSVDITNSLNSQCSCLSSTCDMSMSSQLAMILIDKDAWDKECLILCKIRKLRQNGIKRDPIDLPKIFLLDSHPRTNEHDELKSVGIIDDVLMKPLWLSSLVHSYRESLGAEKNQVQRKKVSKLGSLLMHKQILVVDDNAVNRRVAKGFLQKYGAKVTSVESGMAALKVLKLPHSFDACFMDLQMPEMDGFEATREIRLMESEVNEKIACGQASAEMFGNISYWHIPVLAMTADATQSSNEECRNCGMDDYVTKPFEEEQLYMAMTRFFQPDS 1259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00220 1259 CDD HATPase_EvgS-ArcB-TorS-like 778 937 - -
Vimu1g00220 1259 SMART REC_2 1117 1251 IPR001789 GO:0000160
Vimu1g00220 1259 SMART CHASE_2 379 577 IPR006189 -
Vimu1g00220 1259 SMART HKATPase_4 773 942 IPR003594 -
Vimu1g00220 1259 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 649 729 IPR036097 GO:0000155|GO:0007165
Vimu1g00220 1259 MobiDBLite consensus disorder prediction 244 265 - -
Vimu1g00220 1259 MobiDBLite consensus disorder prediction 1 33 - -
Vimu1g00220 1259 CDD REC_hyHK_CKI1_RcsC-like 1119 1251 - -
Vimu1g00220 1259 PRINTS Bacterial sensor protein C-terminal signature 902 920 IPR004358 GO:0016310|GO:0016772
Vimu1g00220 1259 PRINTS Bacterial sensor protein C-terminal signature 926 939 IPR004358 GO:0016310|GO:0016772
Vimu1g00220 1259 PRINTS Bacterial sensor protein C-terminal signature 885 895 IPR004358 GO:0016310|GO:0016772
Vimu1g00220 1259 PRINTS Bacterial sensor protein C-terminal signature 867 881 IPR004358 GO:0016310|GO:0016772
Vimu1g00220 1259 Pfam His Kinase A (phospho-acceptor) domain 663 728 IPR003661 GO:0000155|GO:0007165
Vimu1g00220 1259 Gene3D - 727 943 IPR036890 -
Vimu1g00220 1259 Pfam CHASE domain 386 575 IPR006189 -
Vimu1g00220 1259 FunFam Histidine kinase 4 635 726 - -
Vimu1g00220 1259 Gene3D - 1112 1258 - -
Vimu1g00220 1259 CDD HisKA 663 724 IPR003661 GO:0000155|GO:0007165
Vimu1g00220 1259 SUPERFAMILY CheY-like 1117 1255 IPR011006 -
Vimu1g00220 1259 SMART HisKA_10 663 728 IPR003661 GO:0000155|GO:0007165
Vimu1g00220 1259 Pfam Response regulator receiver domain 1119 1250 IPR001789 GO:0000160
Vimu1g00220 1259 Gene3D CHASE domain 384 609 IPR042240 -
Vimu1g00220 1259 Gene3D - 292 344 - -
Vimu1g00220 1259 Gene3D - 66 100 - -
Vimu1g00220 1259 MobiDBLite consensus disorder prediction 1 31 - -
Vimu1g00220 1259 Gene3D - 638 726 - -
Vimu1g00220 1259 ProSiteProfiles CHASE domain profile. 378 602 IPR006189 -
Vimu1g00220 1259 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 717 937 IPR036890 -
Vimu1g00220 1259 PANTHER TWO-COMPONENT HISTIDINE KINASE 275 1248 - -
Vimu1g00220 1259 FunFam Histidine kinase 4 383 609 - -
Vimu1g00220 1259 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 773 937 IPR003594 -
Vimu1g00220 1259 ProSiteProfiles Response regulatory domain profile. 965 1095 IPR001789 GO:0000160
Vimu1g00220 1259 ProSiteProfiles Histidine kinase domain profile. 670 942 IPR005467 -
Vimu1g00220 1259 ProSiteProfiles Response regulatory domain profile. 1118 1255 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00220 Vimu-Chr1 1224235 1232529 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00220 41 1257 Miscellaneous Gene Families AT5G35750 55.312 0.0 1272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu1g00220 CHASE 3.2e-32 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00220 K14489 - gmx:100805107 2070.05