Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00217 ATGCAGGCATCAGAGCAACATAGAAGTTCAAGCATGTACTATCAACCATTACAACAAATTGAAGCCTACTGCTTGCCGCAGTATGGGAACCTTAATCAACAGCTATATTACCATGGTGGAAGCCATGGAACTCACTTTTCAACTCCAAGTTCTTCTGAACTTTACTGTACATTGGAATCATCTTCTGTAGCTGGCAGTTTCACCCTTTACAACTCTCCTTCAACTGTTAGTTTCTCACCTAATGGTAGCCCCATATCACAGCATGACTCTCAGTCATATCCACCTGACCAGTATCATTCCCCTGAGAATGCCTATGGCTCTCCATTGAGTGGCTCCTGCATAACCGATGATTTAAGCAGCTTCAAGCACAAACTGAGAGAGTTGGAAAGTGTAATGCTTGGCCCTGACTCTGATAATCTTGATAGTTATGACAGTGCCATAAGCAATGGAAACAACTTTGCTTCACCTGAGATGGACAGCTGGAGACAAACAATGGTGGCAATTTCTAGCAAAAACCTGAAGCACATCCTTGTTGCATGTGCCAAAGCCATTGCAGACAATGATTTGCTTATGGCACAGTGGCTGATGGATGAACTAAGGCAGATGGTGTCAGTTTCTGGCGATCCAGTTCAACGGTTGGGAGCATACATGCTGGAAGGACTTGTTGCACGATTGGCTGCTTCTGGGAGTTCGATATACAAAGCTTTAAGATGCAAAGAACCAGAGAGTGCTGAGCTTCTCTCCTACATGCACATACTGTATGAGGTTTGCCCCTACTTCAAATTCGGGTACATGTCTGCAAATGGAGCCATTGCAGAAGCTACGAAAGATGAAGAAAGGGTGCACATAATTGATTTCCAAATCGGTCAAGGAAGCCAGTGGATAACTTTAATTCAAGCTTTTGCAGCTAGACCTGGAGGGCCACCCCACATTCGTATTACAGGTATTGATGACTCACAATCAGCTTATGCCCGCGGTGGTGGACTGCACATAGTGGGAAGGAGGTTATCAAAGCTTGCTGAGCATTTTAAGGTGCCGTTTGAATTTCACGCTGCTGCTATCTCTGGTTGTGATGTTCAAGTACACAACCTTGGAGTTCGACCGGGGGAAGCTCTGGCTGTGAATTTTGCATTCATGCTACATCACATGCCAGATGAAAGTGTGAGTACACAGAATCACAGGGATAGGTTGTTGAGGTTGGTTAGGAGCCTATCGCCGAAGGTGGTGACACTTGTTGAGCAGGAATCCAACACAAACACTGCTGCATTCTTTCCTCGTTTCCTTGAAACTCTGGACTATTACACAGCAATGTTTGAGTCAATAGATGTTACTCTTCCTAGAATTCATAAAGAGAGAATCAATGTTGAGCAGCATTGTTTGGCAAGAGATTTGGTTAACATCATAGCTTGTGAAGGGGTTGAGAGGGTGGAACGGCATGAAGTACTTGGGAAGTGGAGATCAAGATTTGCAATGGCCGGTTTCACTCCTTACCCTTTGAGTTCACTGGTGAATGGTACCATTAAGAAATTGCTTGAGAACTACAGTAATAGATATAGACTTGAAGAGAGAGATGGAGCTCTTTATCTGGGTTGGATGAATAGAGATTTGGTTGCTTCTTGCGCATGGAAATGA 1632 0.4424 MQASEQHRSSSMYYQPLQQIEAYCLPQYGNLNQQLYYHGGSHGTHFSTPSSSELYCTLESSSVAGSFTLYNSPSTVSFSPNGSPISQHDSQSYPPDQYHSPENAYGSPLSGSCITDDLSSFKHKLRELESVMLGPDSDNLDSYDSAISNGNNFASPEMDSWRQTMVAISSKNLKHILVACAKAIADNDLLMAQWLMDELRQMVSVSGDPVQRLGAYMLEGLVARLAASGSSIYKALRCKEPESAELLSYMHILYEVCPYFKFGYMSANGAIAEATKDEERVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSQSAYARGGGLHIVGRRLSKLAEHFKVPFEFHAAAISGCDVQVHNLGVRPGEALAVNFAFMLHHMPDESVSTQNHRDRLLRLVRSLSPKVVTLVEQESNTNTAAFFPRFLETLDYYTAMFESIDVTLPRIHKERINVEQHCLARDLVNIIACEGVERVERHEVLGKWRSRFAMAGFTPYPLSSLVNGTIKKLLENYSNRYRLEERDGALYLGWMNRDLVASCAWK 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00217 543 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 148 537 IPR005202 -
Vimu1g00217 543 ProSiteProfiles GRAS family profile. 164 543 IPR005202 -
Vimu1g00217 543 Pfam GRAS domain family 173 543 IPR005202 -
Vimu1g00217 543 MobiDBLite consensus disorder prediction 78 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00217 Vimu-Chr1 1199033 1200664 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00217 12 543 GRAS Transcription Factor Family AT5G48150 66.357 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu1g00217 GRAS 5.5e-138 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00217 - - gmx:100808300 1031.55