Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00216 ATGGTTTCTTCAGAAAAAAGTGAAGATCAAAATAACCCTTATGATAAATTGCAGCATAGAGCGAGTCCTGATAGTGATGTTACATTGTCTCAAGGTCATGATGATACTAAAAATGATCTGTCCAAACCAGAGGGAGCCACAAGTATTCCTTCTGCTGTAGCTAAAAATGAAGAGGGGAAGGACTCCGATGCTACTGCTTGTGCCCTGGAATCAGATCAAGAAGGAAGCACGTGCTCATTACCACCTGAGAAACATTTGCAGAGCCCTGATACTCTTTTGAATGAATTGCCTCCATTGCAATCCAGTCAGGAAAGTCCCTCAATAATACGTGAAAAGGTATCTAAAGATGGCTATAACTGGCGAAAATATGGTCAGAAACATGTCAAGGGGAATGAATTTATAAGGAGCTATTACAAGTGTACATATCCAAACTGCCAGGCAAAAAAGCAATTGCAGCAGTCTAATAATGGGAACATCACAGATTGTGTTTCTATCGGACAGCATAATCATCCTAGGCCTCAATTGAACTCCACAGTATCAGTTGAGTGTGTTTTGCCGGTTGTTGTTGAACAAGCAGCGCGCAAACCCTTGTTAGCCAATGTGAAAGACAAAACATCCGTTGAGCAAGGATGCACGTCTCAACAGATCAAGCCTTTACAGTCCTTTCCGATTGCAAAAGTGTCCCCAGTTAATGAGTTGAAAGCTGCACATTTACAATTGTCTAAGGCAAAGAATCAGATTCATGACAACGAGGATCCTGAGTCAAAGCGACTGAAGAAAGACAATAGTAATGTTGATGCCACTGGAATTACCATGTCAACTCGTGAACCTCGTGTTGTTGTTCAGACTTCAAGTGAGGTTGATTTGGTAAATGATGGGTATCGCTGGCGCAAATATGGGCAGAAGCTAGTTAAAGGGAATGCAAACCCAAGAAGTTATTATCGATGTTCAAATCCTGGATGCCCTGTCAAAAAGCATGTGGAAAGGGCCTCTCATGATTCAAAAATTGTAATAACTACCTATGAGGGACAACATGATCATGAACTCCCCCCTGGAAGGACTGTCACTCATAATGCAGCTACAAATACTCACACAACGACCATGAATGGCAAGGCAGGAACCAAATCTGAAGATACTGCTGTTAATAGAGGGGAACAAACTGGCTTGGGCTCAGCAAGCAAATTAACAGAGCAACTAAATGGCAAGTCAACTACTGAGTCAAAGGTCGGTGATATTGTGGAGTTTGGCGTGAGCAGTCTTTCTAATGAGGGTCCTAAAATTAAATTAAGTGAGCAACAGCAAAAAGATAACTCAGGTACTAAAGACGATTCTGTCAGCAATGATGTTATATGCCATTCTAGTTCTGGAGTTCCGTGTAGATCCAATGAACAGCTGAAAGGTGAGGTAAAACCTTTATCAGAAGGAACTAAGGATTGCCTTAACAAGGTTGCCATTCATGATACCTCCAGTACAGAAAGCGAATTTAATAAGCAACCAGCAGCTGATGCAGAACCGGTCCAAAGCTAA 1527 0.4178 MVSSEKSEDQNNPYDKLQHRASPDSDVTLSQGHDDTKNDLSKPEGATSIPSAVAKNEEGKDSDATACALESDQEGSTCSLPPEKHLQSPDTLLNELPPLQSSQESPSIIREKVSKDGYNWRKYGQKHVKGNEFIRSYYKCTYPNCQAKKQLQQSNNGNITDCVSIGQHNHPRPQLNSTVSVECVLPVVVEQAARKPLLANVKDKTSVEQGCTSQQIKPLQSFPIAKVSPVNELKAAHLQLSKAKNQIHDNEDPESKRLKKDNSNVDATGITMSTREPRVVVQTSSEVDLVNDGYRWRKYGQKLVKGNANPRSYYRCSNPGCPVKKHVERASHDSKIVITTYEGQHDHELPPGRTVTHNAATNTHTTTMNGKAGTKSEDTAVNRGEQTGLGSASKLTEQLNGKSTTESKVGDIVEFGVSSLSNEGPKIKLSEQQQKDNSGTKDDSVSNDVICHSSSGVPCRSNEQLKGEVKPLSEGTKDCLNKVAIHDTSSTESEFNKQPAADAEPVQS 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00216 508 ProSiteProfiles WRKY domain profile. 109 173 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g00216 508 FunFam WRKY transcription factor 101 174 - -
Vimu1g00216 508 Gene3D WRKY domain 103 174 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu1g00216 508 MobiDBLite consensus disorder prediction 1 22 - -
Vimu1g00216 508 MobiDBLite consensus disorder prediction 483 497 - -
Vimu1g00216 508 FunFam WRKY transcription factor 57 276 350 - -
Vimu1g00216 508 ProSiteProfiles WRKY domain profile. 285 350 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g00216 508 MobiDBLite consensus disorder prediction 1 108 - -
Vimu1g00216 508 MobiDBLite consensus disorder prediction 443 461 - -
Vimu1g00216 508 SMART WRKY_cls 114 172 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g00216 508 SMART WRKY_cls 290 349 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g00216 508 MobiDBLite consensus disorder prediction 384 405 - -
Vimu1g00216 508 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 71 367 IPR044810 GO:0003700
Vimu1g00216 508 MobiDBLite consensus disorder prediction 69 84 - -
Vimu1g00216 508 MobiDBLite consensus disorder prediction 93 108 - -
Vimu1g00216 508 SUPERFAMILY WRKY DNA-binding domain 110 173 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu1g00216 508 MobiDBLite consensus disorder prediction 422 508 - -
Vimu1g00216 508 MobiDBLite consensus disorder prediction 244 263 - -
Vimu1g00216 508 MobiDBLite consensus disorder prediction 243 271 - -
Vimu1g00216 508 SUPERFAMILY WRKY DNA-binding domain 282 350 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu1g00216 508 Gene3D WRKY domain 277 343 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu1g00216 508 Pfam WRKY DNA -binding domain 291 348 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g00216 508 Pfam WRKY DNA -binding domain 115 171 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00216 Vimu-Chr1 1194967 1197328 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00216 99 372 WRKY Transcription Factor Family AT2G04880 49.110 1.57e-85 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu1g00216 WRKY 2.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00216 K18834 - gmx:100781219 807.749