Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00214 ATGCCTGCAGAGAAGTCGAACAGTTGCGACACCGAAGTGGAGGCGTTCGTGGAGGTTGATCCGACGGGAAGGTTTGGGCGTTACAACGATCTTCTCGGTTGTGGTGCTGTGAAGAAGGTTTACAGAGCTTTTGATCAAGAGGAAGGAATTGAGGTGGCGTGGAATCAGGTTCGGCTCAGGAATTTCAGCGAAGACCCTGTTCTCATCAATCGCCTTCATTCTGAGGTTGAGTTGCTGAGAACCCTCAGCAACAAGTACATCATCGTCTGTTACAGTGTGTGGAAGGATGAGGAACGCCACAACATCAATTTCATCACTGAGATTTGCACTTCCGGGAACCTCAGGGATTACCGCAAGAAGCACCGCCATGTCTCCATTAAGGCTTTCAAGAAGTGGTCCAAACAGGTCCTTGAGGGGTTGGAATATCTTCATACTCATGATCCATGCATCATTCACAGGGATCTCAATTGCAGCAACATCTTCGTTAACGGCAACATTGGCCAGGTGAAAATTGGTGATCTTGGATTGGCTGCAATAGTGGGAAGGAACCATGCTGCACATTCGATTTTAGGAACACCTGAATACATGGCACCGGAGCTGTATGAGGAAGATTACACTGAGATGGTGGACATATACTCTTTTGGAATGTGTTTGCTTGAAATGGTTACAATGGAGATACCCTACAGCGAATGTGACAGTGTGGCGAAGATCTACAAAAAGGTCACTAAGGGAATTAAGCCTCAGGCTTTGAGCAAAGTCACAGAACCAGAGGTGAAGGAATTCATTGAGAAATGCATAGCACAGCCAAGGGCAAGACCTTCAGCCACAGATCTCCTTAAAGATCCTTTCTTTTATGAACTCAACAATGATGAAGAATCGACGCCATTAAATTGA 894 0.4609 MPAEKSNSCDTEVEAFVEVDPTGRFGRYNDLLGCGAVKKVYRAFDQEEGIEVAWNQVRLRNFSEDPVLINRLHSEVELLRTLSNKYIIVCYSVWKDEERHNINFITEICTSGNLRDYRKKHRHVSIKAFKKWSKQVLEGLEYLHTHDPCIIHRDLNCSNIFVNGNIGQVKIGDLGLAAIVGRNHAAHSILGTPEYMAPELYEEDYTEMVDIYSFGMCLLEMVTMEIPYSECDSVAKIYKKVTKGIKPQALSKVTEPEVKEFIEKCIAQPRARPSATDLLKDPFFYELNNDEESTPLN 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00214 297 Gene3D Phosphorylase Kinase; domain 1 10 107 - -
Vimu1g00214 297 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 9 287 - -
Vimu1g00214 297 CDD STKc_WNK 24 284 - -
Vimu1g00214 297 Pfam Protein kinase domain 30 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00214 297 Gene3D Transferase(Phosphotransferase) domain 1 109 289 - -
Vimu1g00214 297 SUPERFAMILY Protein kinase-like (PK-like) 19 284 IPR011009 -
Vimu1g00214 297 FunFam probable serine/threonine-protein kinase WNK9 109 290 - -
Vimu1g00214 297 FunFam Probable serine/threonine-protein kinase WNK1 11 107 - -
Vimu1g00214 297 ProSiteProfiles Protein kinase domain profile. 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00214 Vimu-Chr1 1186790 1187875 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00214 10 284 MAP Kinase Kinase Kinase AT5G55560 78.545 7.91e-171 474
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vimu1g00214 Pkinase 3.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00214 K08867 - gmx:100807414 596.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02061 2 15313970 15314362 Vimu1g00214 1 1186790 1187875 PCT