Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00211 TTGAAGCGTCTTTTGCCTGTAGATAAAATGCAATCAGATAATGGCAAGTTATTTATCGGTGGAATATCATGGGACACAAATGAGGAGCGACTCAGGGAGTATTTCAGTACTTATGGGGAGGTTGTGGAAGCAGTGATAATGAAGGATCGGACAACAGGTAGAGCCAGAGGATTTGGTTTTGTTGTTTTTTCCGATCCTGCTGTCGCTGAAATAGTCATAAAAGAGAAGCACAACATTGACGGAAGGATGGTTGAGGCAAAGAAAGCTGTTCCCAGGGATGATCAGAACATACTGAGTAGAAACAGTGGCAGCATCCATGGTTCACCAGGTCCTGGTCGCACTAGAAAGATATTTGTTGGAGGTTTAGCATCAACAGTGACGGAGAGTGATTTCAAAAAGTACTTTGATCAGTTTGGGACTATAACAGACGTTGTAGTTATGTATGATCACAACACTCAGAGGCCAAGAGGTTTTGGATTTATCACTTATGATTCTGAGGAGGCTGTTGACAAAGTCTTACTAAAGACATTTCATGAATTGAATGGTAAAATGGTTGAGGTCAAGCGAGCAGTTCCTAAGGAATTATCACCTGGACCAAGCCGCACCCCACTCGGTGGATATAACTATGGTCTCAGTAGGGTCAATAGTTTCTTAAATGGCTTCACACAGGGGTATAGTCCAAGTACTGTTGGAGGCTATGGACTTCGAGCGGATGGTAGATTCAGTCCTGTTGCCAGTGGTAGAAGTGGATTTGCTCCTTTTGGATCAGGTTATGGGATGAGCATGAATTTTGAGCCTGGTTTGAATGCTGGATTTGGGGGGAATGCAAATTTCAATAGCAATCTTAGCTATGGGCGGGGAGTAAATCCTTATTTTATTGGCAGTTCCAATAGATTTGGCAGTCCTGTTGGATTTGAAAGTGGCAATGGAGGAAACAATTCTTTCTTCAGTTCTGTGACTCGAAATTTGTGGGGTAATGGTGGCCTTAGTTATGGAACAAATTCTGCAAATTCCAATGCGTATATTGGATCAGGGAGTGGAAGTATTGGTGGAAATACATTTGGCAACACTGGAGTCAACTGGGGTGGTTCTTCAGCAATTTCTGCGCAGGGAGGAGGGAACAACATGTCACAAAGTAGTGGCAACCTGGGTTATGGAAGTGGTGACAATAATTATGGCTTGGGGACTGGAGGGTATGGAAGAAACACTGGTACCACTTTTGCACCAACATCTTCGTACTCTACATCAAATGGTGGTGTAGATGGGGCTTTTGCAGACTTTTACAATAATAGTTCTGTTTATGGAGACCCCACTTGGCGCTCTTCAAATTCTGAGAGAGATGGATCTGGTCCCTTCGGTTATGGACTTGGTGGAGCAGCTTCTGATGTTTCTACCAAGAGTTCTCCAGGTTATGTTGGTGGTTATACTGTTAATAAGAGGCAGCCAAATAGGGGTAAGACTTACAATTTTTTTTTGACGATTTTCTTCTTATTGATATGTTTGGATTTTTAG 1512 0.4272 MKRLLPVDKMQSDNGKLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSDPAVAEIVIKEKHNIDGRMVEAKKAVPRDDQNILSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRTPLGGYNYGLSRVNSFLNGFTQGYSPSTVGGYGLRADGRFSPVASGRSGFAPFGSGYGMSMNFEPGLNAGFGGNANFNSNLSYGRGVNPYFIGSSNRFGSPVGFESGNGGNNSFFSSVTRNLWGNGGLSYGTNSANSNAYIGSGSGSIGGNTFGNTGVNWGGSSAISAQGGGNNMSQSSGNLGYGSGDNNYGLGTGGYGRNTGTTFAPTSSYSTSNGGVDGAFADFYNNSSVYGDPTWRSSNSERDGSGPFGYGLGGAASDVSTKSSPGYVGGYTVNKRQPNRGKTYNFFLTIFFLLICLDF 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00211 503 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117 174 IPR000504 GO:0003723
Vimu1g00211 503 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 78 IPR000504 GO:0003723
Vimu1g00211 503 FunFam Heterogeneous nuclear ribonucleoprotein 1 14 96 - -
Vimu1g00211 503 SMART rrm1_1 16 87 IPR000504 GO:0003723
Vimu1g00211 503 SMART rrm1_1 116 188 IPR000504 GO:0003723
Vimu1g00211 503 SUPERFAMILY RNA-binding domain, RBD 113 211 IPR035979 GO:0003676
Vimu1g00211 503 CDD RRM2_Hrp1p 116 193 - -
Vimu1g00211 503 CDD RRM1_hnRNPA_hnRNPD_like 17 87 - -
Vimu1g00211 503 Gene3D - 13 97 IPR012677 -
Vimu1g00211 503 FunFam Heterogeneous nuclear ribonucleoprotein 1 112 199 - -
Vimu1g00211 503 Gene3D - 112 198 IPR012677 -
Vimu1g00211 503 SUPERFAMILY RNA-binding domain, RBD 8 114 IPR035979 GO:0003676
Vimu1g00211 503 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 91 IPR000504 GO:0003723
Vimu1g00211 503 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 115 192 IPR000504 GO:0003723
Vimu1g00211 503 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 10 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00211 Vimu-Chr1 1169710 1171530 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00211 17 194 Eukaryotic Initiation Factors Gene Family AT2G36660 32.620 1.10e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00211 K14411 - gmx:100795907 855.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00211 1 1169710 1171530 Vimu1g00211 1 1169710 1171530 ECH