Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00195 ATGGCAGAGCAAAGCATGAAAGAGGAAAGTGCAGAGGAAGTAGTATCTGATGAAGAAGCTTATCTGTTTGCCATGGAACTAGCTGGTGCCTCTGCTGTTCCCATGGTTCTGAAGTCAGCTATTGAACTTGGCATCTTGGAAACCATAGCCAAGGCTGGTCCTGGAGCTCATCTTTCTCCTTCTGAAATAGCTGCTCAGATACCAAATATAAAGAACCCTAATGCACCTGCCATGTTGGACCGCATGTTCCGCCTTTTGGCTAGCTACAACATCCTCAAACTTCGATTCCCCGATGGTAATATGTCTGAAAGGCACTACGGTCTTCACCCAAAAGCCAAATACCTTGTCAACAATCAAGATGCTGTGTCTGTGGCTGCTTACTTTCTCATGCAACACGACAAAGTCCTCAAAGAAATGTGGTACAAGTTGACAGAATCAGTTGAGGAGGGTGGATTTCCATTTAACAATGCTTATGGAATGAATGCCTTTGAGTTCCATGATGCAAATCCAAGATTTAATAGGCTATTCAATAAGGGGTTGTCTGATTGTTCTAGCATCACGATGAAGAAGATTCTTGAGATTTACGAAGGGTTTGAGGATGTTGGATCTTTGGTTGATGTTGGCGGTGGAACTGGGGCTGTCATCAGCATGATTGCCTCCAAGTATTCCTCCATAAAGTGTCTTAATTTCGACTTACCCCACGTTATCAAAGAAGCTCCACCTTACGCAGGCGTTGAACATGTGGGTGGAGACATGTTTGTGAGCGTTCCAAAAGCTGACGCCATTTTTATGAAGTGGGTATGTCATGATTGGAATGATGAGCAATGCTTGAAATTGCTGAAGAACTGTTATGATTCTCTTCCTGACACTGGAAAGGTGATTTTAGTTGAAGGGCTTATTCCAGAAATCCCAAATTCTAAGTTAGCTTCAAAGTGTGAGTTTCAAATGGATATTGTGATGTTGTGTCATAGCCCGAATGGGAAAGAGAGAACAGAGAAAGAGTACAAGGCTTTGGCTAAAGGAGCTGGATTCCATGGTTTCATAATAGCATGTTGTGTTTTCAATACTTACGTTATGGAATTACTTAAAAAGGCTTAG 1098 0.4235 MAEQSMKEESAEEVVSDEEAYLFAMELAGASAVPMVLKSAIELGILETIAKAGPGAHLSPSEIAAQIPNIKNPNAPAMLDRMFRLLASYNILKLRFPDGNMSERHYGLHPKAKYLVNNQDAVSVAAYFLMQHDKVLKEMWYKLTESVEEGGFPFNNAYGMNAFEFHDANPRFNRLFNKGLSDCSSITMKKILEIYEGFEDVGSLVDVGGGTGAVISMIASKYSSIKCLNFDLPHVIKEAPPYAGVEHVGGDMFVSVPKADAIFMKWVCHDWNDEQCLKLLKNCYDSLPDTGKVILVEGLIPEIPNSKLASKCEFQMDIVMLCHSPNGKERTEKEYKALAKGAGFHGFIIACCVFNTYVMELLKKA 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00195 365 PIRSF O-mtase 1 364 IPR016461 GO:0008168
Vimu1g00195 365 Gene3D - 2 115 IPR036388 -
Vimu1g00195 365 PANTHER O-METHYLTRANSFERASE 24 344 IPR016461 GO:0008168
Vimu1g00195 365 Gene3D Vaccinia Virus protein VP39 116 363 IPR029063 -
Vimu1g00195 365 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 25 363 IPR016461 GO:0008168
Vimu1g00195 365 SUPERFAMILY "Winged helix" DNA-binding domain 17 118 IPR036390 -
Vimu1g00195 365 FunFam Caffeic acid O-methyltransferase 116 363 - -
Vimu1g00195 365 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 123 359 IPR029063 -
Vimu1g00195 365 CDD AdoMet_MTases 204 296 - -
Vimu1g00195 365 Pfam Dimerisation domain 35 87 IPR012967 GO:0046983
Vimu1g00195 365 FunFam Caffeic acid 3-O-methyltransferase 3 115 - -
Vimu1g00195 365 Pfam O-methyltransferase domain 140 344 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00195 Vimu-Chr1 1075599 1077421 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00195 15 364 Monolignol Biosynthesis Gene Families AT5G54160 59.375 3.21e-155 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00195 K13066 - gmx:100780100 484.182