Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00194 ATGAATGCCTTTGAGTTCCATGATGCAAATCCAAGATTTAATAGGCTTTTCAATAAGGGGTTGTCTGATTGTTCTAGCATCACGATGAAGAAGATTCTTGAGATTTACAAAGGGTTTGAGGATGTTGGATCTTTGGTTGATGTTGGTGGTGGAACTGGTGCTGTCATCAGCATGATTGCCTCCAAGTATTCCTCCATAAAGTGTCTTAATTTCGACTTACCCCACGTTATCAAAGAAGCTCCATCTTACGCAGGCGTTGAACATGTGGGTGGAGACATGTTTGTGAGGGTTCCAAACGCTGACGCCATTTTTATGAAGTGGGTATGTCATGACTGGAATGACGAGCAATGCTTGAAACTGTTGAAGAATTGTTATGATTCTCTTCCTGATACTGGAAAGGTGATTTTAGTTGAAGGGCTTATTCCCAAAACCCCAAATTCTAAGTTAGCTTCAAAGTGTGAGTTTCAAATGGATATTGTGATGTTGTGTCATAGCCCGAATGGGAAAGAGAGAACAGAAAAAGAGTACGAGGCTTTGGCTAAAGGAGCTGGATTCCATGGTTTCAGAATAGCATGTTGTGTTTTCAATACTTACGTTATGGAGTTCCTTAAAAAGGCTTAA 621 0.4042 MNAFEFHDANPRFNRLFNKGLSDCSSITMKKILEIYKGFEDVGSLVDVGGGTGAVISMIASKYSSIKCLNFDLPHVIKEAPSYAGVEHVGGDMFVRVPNADAIFMKWVCHDWNDEQCLKLLKNCYDSLPDTGKVILVEGLIPKTPNSKLASKCEFQMDIVMLCHSPNGKERTEKEYEALAKGAGFHGFRIACCVFNTYVMEFLKKA 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00194 206 Gene3D Vaccinia Virus protein VP39 14 194 IPR029063 -
Vimu1g00194 206 CDD AdoMet_MTases 45 137 - -
Vimu1g00194 206 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 2 202 IPR029063 -
Vimu1g00194 206 PANTHER O-METHYLTRANSFERASE 3 188 IPR016461 GO:0008168
Vimu1g00194 206 Gene3D - 4 32 IPR036388 -
Vimu1g00194 206 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 204 IPR016461 GO:0008168
Vimu1g00194 206 Pfam O-methyltransferase domain 2 185 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00194 Vimu-Chr1 1071639 1073082 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00194 1 205 Monolignol Biosynthesis Gene Families AT5G54160 62.439 1.10e-98 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00194 K13066 - qsa:O6P43_020016 321.627