Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00179 ATGAAAACACTCATTTTCTCAGTCGTTGAGTTCATTGCCGAGAAAGAGATGGCGCAGCTTCCCTGTGACCCCGACGGCGTTTGCATGCGATGCAAGGAGAAACCCCCTTCTTCCCAAACCCTCACTTGCCGGACCTGCGCCACTCCATGGCACCTTTCTTGCCTCACTGAGCCTCCGGTCTCCGATTCCGACACCCACTGGGAGTGTCCCGACTGCTCTGACCTCTCCAATCCTGTCCCAGTCGCTCCCTCCGACGGCATTGTCCTCGCCGTCCGCGATATTCAGTTAGACACGTCACTCTCCGAGCGACAAAAGGCTAAAAAATGCCAAGAAGTGCTCGCCGGTTCCTCCGATCTTTCTAAGGACAAAAATGCTCCCGATATCTTTGACGGGAGTTTCAACTGCTCTATATGCATGCAACTGCCTGATAGGCCTGTCACGACACCTTGTGGGCATAATTTCTGCCTGAGGTGCTTTGAGAAATGCATCAATCAGGGAAGGCATAATTGTGCGAATTGTCGGACTCCAATCCCTGCGAAGATGTATACTCAGCCGAGAATTAACTCTCAGTTGGCTATGGCTATTCGATTGGCTAAGGCAGCGAGGTCTGGGCAGTCTTCTGGGCCACCTAAAGTGCATCACTTTGTGCGCAATCAGGATCGCCCAGATACTGCCTTTACCACTGATCGGGCGAAGAAAACTGGAAAAGCTAATGCTTGTTCTGGTAAGATTTTTGTTACGGTTCCACCCGACCATTTTGGGCCGATTCCAGCTGAAAACGATCCCAAGAGGAATCGCGGGGTTTTGGTTGGTGACACGTGGGAGGACAGGATGGAATGTCGGCAATGGGGCGCTCATTTACCTCATGTAGCTGGTATCGCTGGACAGAGTAGTTATGGTGCCCAATCTGTTGCGCTCTCGGGTGGTTACGTGGATGATGAGGATCATGGGGAATGGTTCCTTTATACTGGCAGTGGTGGAAGAGATCTGAGTGGAAACAAGCGCACGAACAAAACTCAATCTTTTGACCAGAAGTTTGAAAACATGAATGAAGCTTTGAGACAAAGCTGCCGAATGGGTTATCCTGTTCGTGTTGTAAGGTCGCATAAGGAAAAACGTTCTGCTTATGCACCCGAAGCTGGGGTGCGTTATGATGGGGTCTATAGAATAGAAAAATGCTGGCGCAAGGATGGAATTCAAGGCTGTAAGGTTTGTAGGTATTTGTTTGTGAGGTGTGACAATGAGCCAGCGCCGTGGACAAGTGATGAATCTGGAGACCGTCCACGACCACTACCTGAGATTGAGGAGTTAATTGGTGCAATTGATATAACAGAAAGGAAGGACGATCCATCGTGGGATTATGATGAAGAAAAGGAGTGCTGGTTGTGGAAGAAGCCTCCTCCAGAAAGCAGGAAATCAGTGGACTCTGGAGATTGTTCAAAAGTCAGAGTTAAACGGAAGTCGAACATCGCGACTGAGAGAGAAAAGCTGCTGAAAGGGTTTCGTTGCGGAATATGCCGCAAGGTGATGCAGTTACCCATTACTACACCTTGTGGTCACAACTTCTGCAAAGCCTGTTTGGAGGGTGCCTTTGCCGGACAAAGTTTGATGAGGGAAAGGTCACGTGAAGGTGGACGAAGTTTGCGAGCACAAAAGAATGTTAAGAAATGCCCATCATGTTCTAATGACATTGCTGACTTTCTTGAGAATCCACAGGTTAATAGGGAAATGCTGACTTTGATAGAATCATGGGGAAAGAAGCCTGAAGAAGAAAACCCTGAGGAGTCAAATGAAAATGACGAAAATGATGATAATGATGAAAGTCTGGATGATGCAGCTGAGGTTTCAAAACCTTCTGATTCTGCTGATAATGTTCTGGAGGAAATTAAGGACAATGATCTGAATCAGCAACATAAGCGAAGGAAGGAGTGA 1932 0.4803 MKTLIFSVVEFIAEKEMAQLPCDPDGVCMRCKEKPPSSQTLTCRTCATPWHLSCLTEPPVSDSDTHWECPDCSDLSNPVPVAPSDGIVLAVRDIQLDTSLSERQKAKKCQEVLAGSSDLSKDKNAPDIFDGSFNCSICMQLPDRPVTTPCGHNFCLRCFEKCINQGRHNCANCRTPIPAKMYTQPRINSQLAMAIRLAKAARSGQSSGPPKVHHFVRNQDRPDTAFTTDRAKKTGKANACSGKIFVTVPPDHFGPIPAENDPKRNRGVLVGDTWEDRMECRQWGAHLPHVAGIAGQSSYGAQSVALSGGYVDDEDHGEWFLYTGSGGRDLSGNKRTNKTQSFDQKFENMNEALRQSCRMGYPVRVVRSHKEKRSAYAPEAGVRYDGVYRIEKCWRKDGIQGCKVCRYLFVRCDNEPAPWTSDESGDRPRPLPEIEELIGAIDITERKDDPSWDYDEEKECWLWKKPPPESRKSVDSGDCSKVRVKRKSNIATEREKLLKGFRCGICRKVMQLPITTPCGHNFCKACLEGAFAGQSLMRERSREGGRSLRAQKNVKKCPSCSNDIADFLENPQVNREMLTLIESWGKKPEEENPEESNENDENDDNDESLDDAAEVSKPSDSADNVLEEIKDNDLNQQHKRRKE 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00179 643 SMART PHD_3 27 73 IPR001965 -
Vimu1g00179 643 Pfam Zinc finger, C3HC4 type (RING finger) 134 178 - -
Vimu1g00179 643 ProSiteProfiles Zinc finger RING-type profile. 135 174 IPR001841 -
Vimu1g00179 643 MobiDBLite consensus disorder prediction 584 643 - -
Vimu1g00179 643 SMART ring_2 135 173 IPR001841 -
Vimu1g00179 643 SMART ring_2 28 72 IPR001841 -
Vimu1g00179 643 SMART ring_2 503 560 IPR001841 -
Vimu1g00179 643 Gene3D - 234 430 IPR036987 -
Vimu1g00179 643 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 201 IPR013083 -
Vimu1g00179 643 MobiDBLite consensus disorder prediction 594 610 - -
Vimu1g00179 643 Pfam RING-type zinc-finger 503 544 IPR027370 -
Vimu1g00179 643 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 77 IPR013083 -
Vimu1g00179 643 ProSitePatterns Zinc finger RING-type signature. 518 527 IPR017907 -
Vimu1g00179 643 ProSiteProfiles Zinc finger PHD-type profile. 25 75 IPR019787 -
Vimu1g00179 643 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 11 602 IPR045134 -
Vimu1g00179 643 ProSiteProfiles YDG domain profile. 263 411 IPR003105 -
Vimu1g00179 643 ProSiteProfiles Zinc finger RING-type profile. 503 561 IPR001841 -
Vimu1g00179 643 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 234 429 - -
Vimu1g00179 643 SUPERFAMILY FYVE/PHD zinc finger 13 78 IPR011011 -
Vimu1g00179 643 SMART G9a_1 258 415 IPR003105 -
Vimu1g00179 643 CDD RING-HC_ORTHRUS_rpt1 132 178 IPR047498 -
Vimu1g00179 643 SUPERFAMILY RING/U-box 497 586 - -
Vimu1g00179 643 SUPERFAMILY RING/U-box 127 184 - -
Vimu1g00179 643 Pfam SAD/SRA domain 266 414 IPR003105 -
Vimu1g00179 643 ProSitePatterns Zinc finger PHD-type signature. 28 72 IPR019786 -
Vimu1g00179 643 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 488 618 IPR013083 -
Vimu1g00179 643 MobiDBLite consensus disorder prediction 611 643 - -
Vimu1g00179 643 SUPERFAMILY PUA domain-like 237 432 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00179 Vimu-Chr1 981670 984830 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00179 19 590 C2H2 Transcription Factor Family AT5G39550 61.840 0.0 737
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00179 K10638 - gmx:100786796 1015.37