LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu1g00175	ATGGCAAGCTTTATCCAACAAAAGGGTAGTATTGAAAGTGAGTTTAGTGTGATCAACATAGACCCTCTTAACTGGGGTGAGGCAGCAGAATCACTTAAGGGTAGCCACTTGGAGGAAGTGAAAAGAATGGTGGCTGAGTACCGGAAGGCAGTGATCCATCTGGGTGGAGAAGAGAAACTTACTGTGTCAATGGTGGCTGCTGTTGCTAACCATTACTTACAGGCTAAGGTTGACCTCTCAGAGTCTGCAAGGGAAGGCGTTGAAGCCAGCTGCAAATGGGTCATGGATAACATCGACAAAGGCACCCCCATTTATGGTGTCACCACTGGTTTTGGTGCTTCCTCCAACAGGCAAACTCAAGAAGGTCTTGCTCTTCAGAAGGAAATGGTTAGGTTTTTAAATTGCGCAATATTTGGCTACGAAACAGAGTTGTCTCATATACTGCCAAAATCAGCAACAAGAGCAGCAATGCTTGTGAGGGTTAATACCCTTCTTCAAGGGTATTCAGGAATTAGATTTGAAATCTTAGAAGCTATCACCAAACTCCTCAACAACAATGTCACCCCAGTCTTGCCGTTACGTGGTACACTTACTGCTTCTGGTGATCTAATTCCTCTGTCATACATTGTTGCATTGATAACGGGTAGGCGAAACAGTAAAGCTGTTGGACCCTCTGGAGAGTCCCTCAATGCTAAGGAAGCTTTCCATTTAGCTGGTCTACAAGGTGGGTTCTTTGAGTTGAAGCCCAAAGAAGGTCTTGCTCTTGTAAATGGTACAGCCGTTGGGTCTGGTGTAGCTTCTATGGTGCTTTTTGAGGCAAACATATTAGCTTTATTGGCAGAAGTTCTATCAGCAGTTTTTGCTGAAGTCATGCAGGGAAAGCCAGAATTTACACATCACCTTATACATAAGCTGAAGTACCACCCTGGTCAAATTGAAGCTGCCGCTATTATGGAACACATTCTAGATGGAAGCTCTTATGTCAAGAATGCTAAACTGCAACAGCCAGATCCATTGCAGAAGCCTAAAAAAGATCGTTATGCTCTTGTAACTTCTCCTCAATGGCTTGGTCCGCAGATTGAAATCATCCGATTTTCGACCAAATCAATTGAAAGGGAAATAAACTCTGTAAATGACAATCCCTTGATTGATGTCACAAGGGATAAAGCTCTGAATGGTGGTAATTTCCAAGGCACCCCAATTGGAGTTTCAATGGATAATGCACGTTTAGCTGTTGCTTCAATTGGTAAACTCATCTTTGCGCAATTTACCGAACTAGACAATGATTTGTATAGTAATGGGCTACCGTCAAACCTGTCTGTTGGTAGAAATCCAAGTCTGGATTATGGTTTTAAGGCATCTGAAGTTGCCATGGCTGCTTATTGTTCTGAACTTCAATATCTAGCAAATCCGGTAACTAGCCATGTGCAAAGTGCTGAGCAGCACAACCAAGATGTGAACTCTTTGGGCTTAATTTCGGCTCTGAAAACTGTCGAAGCCATAGAGATATTAAAGCTTATGTCTTCCACTTATCTGGTTGCACTCTGCCAAGCTATTGACTTGAGGCATTTGGAGGAAATTTTCAAGAACACTGTCAAGAATACTGTAAGCAGAGTTGCACTGAAAACACTAATTACTGAAGACAAAGAAGAAATTAACCCATTTCGACTCTCTGAGGAAGAGTTGCTTAAAGTGGTCGATAGAGAATATGTATTTTCATACATTGATGATCCCTTAAATGTTCGGTACCCATTGATGCCAAAACTAAAGCAGGTGCTTTATGAGCAAGCACACAGCAGTGTCATTAAAGACAAGAATGTGAGTTTGTTGACTTTTGAGAAGATTGGAGCTTTTGAGGATGAATTGAAGTCTCTCTTGCCAAAGGAAATTGAAAGTGCACGGGTGGCTTATGAGAATGGCAATCCAGCAATTCCAAACAGAATCAAGGAGTGCAGATCATATCCTCTATACAAATTTGTGAGGGAGGAGTTGGAGATAGGGTTGCTCACAGGTGAAAAAGCTCTGTCACCAGATGAAGAATTTGAAAAAGTATATACAGCCATGTGTCAAGCAAAGATAATTGACCCAATTCTGGAATGTCTAGGAGATTGGAACGGGGTTCCCATCCCAATATAA	2136	0.4204	MASFIQQKGSIESEFSVINIDPLNWGEAAESLKGSHLEEVKRMVAEYRKAVIHLGGEEKLTVSMVAAVANHYLQAKVDLSESAREGVEASCKWVMDNIDKGTPIYGVTTGFGASSNRQTQEGLALQKEMVRFLNCAIFGYETELSHILPKSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNNNVTPVLPLRGTLTASGDLIPLSYIVALITGRRNSKAVGPSGESLNAKEAFHLAGLQGGFFELKPKEGLALVNGTAVGSGVASMVLFEANILALLAEVLSAVFAEVMQGKPEFTHHLIHKLKYHPGQIEAAAIMEHILDGSSYVKNAKLQQPDPLQKPKKDRYALVTSPQWLGPQIEIIRFSTKSIEREINSVNDNPLIDVTRDKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELDNDLYSNGLPSNLSVGRNPSLDYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAIEILKLMSSTYLVALCQAIDLRHLEEIFKNTVKNTVSRVALKTLITEDKEEINPFRLSEEELLKVVDREYVFSYIDDPLNVRYPLMPKLKQVLYEQAHSSVIKDKNVSLLTFEKIGAFEDELKSLLPKEIESARVAYENGNPAIPNRIKECRSYPLYKFVREELEIGLLTGEKALSPDEEFEKVYTAMCQAKIIDPILECLGDWNGVPIPI	711

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu1g00175	711	ProSitePatterns	Phenylalanine and histidine ammonia-lyases signature.	195	211	IPR022313	GO:0016841
	Vimu1g00175	711	PANTHER	HISTIDINE AMMONIA-LYASE	17	711	IPR001106	-
	Vimu1g00175	711	FunFam	Phenylalanine ammonia-lyase	12	259	-	-
	Vimu1g00175	711	Gene3D	-	13	259	IPR024083	-
	Vimu1g00175	711	CDD	PAL-HAL	60	522	IPR001106	-
	Vimu1g00175	711	Gene3D	-	525	646	IPR023144	-
	Vimu1g00175	711	Gene3D	Fumarase/aspartase (Central domain)	260	706	-	-
	Vimu1g00175	711	NCBIfam	phenylalanine ammonia-lyase	21	701	IPR005922	GO:0005737\|GO:0006559\|GO:0016841
	Vimu1g00175	711	SUPERFAMILY	L-aspartase-like	21	711	IPR008948	GO:0003824
	Vimu1g00175	711	Pfam	Aromatic amino acid lyase	60	525	IPR001106	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu1g00175	Vimu-Chr1	963407	966123	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu1g00175	9	711	Monolignol Biosynthesis Gene Families	AT2G37040	71.206	0.0	1055

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu1g00175	K10775		-	gmx:100787872	1236.86

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