Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00175 ATGGCAAGCTTTATCCAACAAAAGGGTAGTATTGAAAGTGAGTTTAGTGTGATCAACATAGACCCTCTTAACTGGGGTGAGGCAGCAGAATCACTTAAGGGTAGCCACTTGGAGGAAGTGAAAAGAATGGTGGCTGAGTACCGGAAGGCAGTGATCCATCTGGGTGGAGAAGAGAAACTTACTGTGTCAATGGTGGCTGCTGTTGCTAACCATTACTTACAGGCTAAGGTTGACCTCTCAGAGTCTGCAAGGGAAGGCGTTGAAGCCAGCTGCAAATGGGTCATGGATAACATCGACAAAGGCACCCCCATTTATGGTGTCACCACTGGTTTTGGTGCTTCCTCCAACAGGCAAACTCAAGAAGGTCTTGCTCTTCAGAAGGAAATGGTTAGGTTTTTAAATTGCGCAATATTTGGCTACGAAACAGAGTTGTCTCATATACTGCCAAAATCAGCAACAAGAGCAGCAATGCTTGTGAGGGTTAATACCCTTCTTCAAGGGTATTCAGGAATTAGATTTGAAATCTTAGAAGCTATCACCAAACTCCTCAACAACAATGTCACCCCAGTCTTGCCGTTACGTGGTACACTTACTGCTTCTGGTGATCTAATTCCTCTGTCATACATTGTTGCATTGATAACGGGTAGGCGAAACAGTAAAGCTGTTGGACCCTCTGGAGAGTCCCTCAATGCTAAGGAAGCTTTCCATTTAGCTGGTCTACAAGGTGGGTTCTTTGAGTTGAAGCCCAAAGAAGGTCTTGCTCTTGTAAATGGTACAGCCGTTGGGTCTGGTGTAGCTTCTATGGTGCTTTTTGAGGCAAACATATTAGCTTTATTGGCAGAAGTTCTATCAGCAGTTTTTGCTGAAGTCATGCAGGGAAAGCCAGAATTTACACATCACCTTATACATAAGCTGAAGTACCACCCTGGTCAAATTGAAGCTGCCGCTATTATGGAACACATTCTAGATGGAAGCTCTTATGTCAAGAATGCTAAACTGCAACAGCCAGATCCATTGCAGAAGCCTAAAAAAGATCGTTATGCTCTTGTAACTTCTCCTCAATGGCTTGGTCCGCAGATTGAAATCATCCGATTTTCGACCAAATCAATTGAAAGGGAAATAAACTCTGTAAATGACAATCCCTTGATTGATGTCACAAGGGATAAAGCTCTGAATGGTGGTAATTTCCAAGGCACCCCAATTGGAGTTTCAATGGATAATGCACGTTTAGCTGTTGCTTCAATTGGTAAACTCATCTTTGCGCAATTTACCGAACTAGACAATGATTTGTATAGTAATGGGCTACCGTCAAACCTGTCTGTTGGTAGAAATCCAAGTCTGGATTATGGTTTTAAGGCATCTGAAGTTGCCATGGCTGCTTATTGTTCTGAACTTCAATATCTAGCAAATCCGGTAACTAGCCATGTGCAAAGTGCTGAGCAGCACAACCAAGATGTGAACTCTTTGGGCTTAATTTCGGCTCTGAAAACTGTCGAAGCCATAGAGATATTAAAGCTTATGTCTTCCACTTATCTGGTTGCACTCTGCCAAGCTATTGACTTGAGGCATTTGGAGGAAATTTTCAAGAACACTGTCAAGAATACTGTAAGCAGAGTTGCACTGAAAACACTAATTACTGAAGACAAAGAAGAAATTAACCCATTTCGACTCTCTGAGGAAGAGTTGCTTAAAGTGGTCGATAGAGAATATGTATTTTCATACATTGATGATCCCTTAAATGTTCGGTACCCATTGATGCCAAAACTAAAGCAGGTGCTTTATGAGCAAGCACACAGCAGTGTCATTAAAGACAAGAATGTGAGTTTGTTGACTTTTGAGAAGATTGGAGCTTTTGAGGATGAATTGAAGTCTCTCTTGCCAAAGGAAATTGAAAGTGCACGGGTGGCTTATGAGAATGGCAATCCAGCAATTCCAAACAGAATCAAGGAGTGCAGATCATATCCTCTATACAAATTTGTGAGGGAGGAGTTGGAGATAGGGTTGCTCACAGGTGAAAAAGCTCTGTCACCAGATGAAGAATTTGAAAAAGTATATACAGCCATGTGTCAAGCAAAGATAATTGACCCAATTCTGGAATGTCTAGGAGATTGGAACGGGGTTCCCATCCCAATATAA 2136 0.4204 MASFIQQKGSIESEFSVINIDPLNWGEAAESLKGSHLEEVKRMVAEYRKAVIHLGGEEKLTVSMVAAVANHYLQAKVDLSESAREGVEASCKWVMDNIDKGTPIYGVTTGFGASSNRQTQEGLALQKEMVRFLNCAIFGYETELSHILPKSATRAAMLVRVNTLLQGYSGIRFEILEAITKLLNNNVTPVLPLRGTLTASGDLIPLSYIVALITGRRNSKAVGPSGESLNAKEAFHLAGLQGGFFELKPKEGLALVNGTAVGSGVASMVLFEANILALLAEVLSAVFAEVMQGKPEFTHHLIHKLKYHPGQIEAAAIMEHILDGSSYVKNAKLQQPDPLQKPKKDRYALVTSPQWLGPQIEIIRFSTKSIEREINSVNDNPLIDVTRDKALNGGNFQGTPIGVSMDNARLAVASIGKLIFAQFTELDNDLYSNGLPSNLSVGRNPSLDYGFKASEVAMAAYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISALKTVEAIEILKLMSSTYLVALCQAIDLRHLEEIFKNTVKNTVSRVALKTLITEDKEEINPFRLSEEELLKVVDREYVFSYIDDPLNVRYPLMPKLKQVLYEQAHSSVIKDKNVSLLTFEKIGAFEDELKSLLPKEIESARVAYENGNPAIPNRIKECRSYPLYKFVREELEIGLLTGEKALSPDEEFEKVYTAMCQAKIIDPILECLGDWNGVPIPI 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00175 711 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 195 211 IPR022313 GO:0016841
Vimu1g00175 711 PANTHER HISTIDINE AMMONIA-LYASE 17 711 IPR001106 -
Vimu1g00175 711 FunFam Phenylalanine ammonia-lyase 12 259 - -
Vimu1g00175 711 Gene3D - 13 259 IPR024083 -
Vimu1g00175 711 CDD PAL-HAL 60 522 IPR001106 -
Vimu1g00175 711 Gene3D - 525 646 IPR023144 -
Vimu1g00175 711 Gene3D Fumarase/aspartase (Central domain) 260 706 - -
Vimu1g00175 711 NCBIfam phenylalanine ammonia-lyase 21 701 IPR005922 GO:0005737|GO:0006559|GO:0016841
Vimu1g00175 711 SUPERFAMILY L-aspartase-like 21 711 IPR008948 GO:0003824
Vimu1g00175 711 Pfam Aromatic amino acid lyase 60 525 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00175 Vimu-Chr1 963407 966123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00175 9 711 Monolignol Biosynthesis Gene Families AT2G37040 71.206 0.0 1055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00175 K10775 - gmx:100787872 1236.86