Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00174 ATGCGGGCCAATGTAGTAGTGGCTCACCTTCCTCCATATCTTCCACCCCTTTGGCTTTTTAGTGGTTGCAAACACATATCATTCATCCCTAACCTTCACTTCTGTTACTCTCTTTTGCTGCACCAATTGCAAACTCAACAAAGGAGGAGTAGTAGTATAACCACCATGCCTGCACAAGCTCTGCTATCATCTTCATCTCTTGTCCTCTCAGCCGAGGCTGCAAGACAGACTCTCGGACCACGATCACACCAATCTTCCCTTGCCTTCTCCCGAAAAGCCTCCTTCATTGTTAAGGCAGCTTCTACTCCCCCTGTCAAGCAAGGAGCAGACAGACCTTTATGGTTTGCATCAAAGCAAAGTCTTTCTTACTTGGATGGCAGCCTTCCCGGTGACTATGGATTTGACCCTCTTGGACTTTCAGACCCTGAAGGAACAGGAGGGTTCATCGAGCCGAAATGGCTAGCGTATGGTGAGATCATCAATGGTCGTTACGCAATGTTGGGTGCAGTTGGTGCCATAGCACCTGAAATTCTCGGAAAGGCTGGTCTGATCCCTCAGGAGACAGCACTCCCATGGTTTAGAACCGGTGTGATCCCACCTGCAGGAACATACAACTACTGGGCAGACTCGTACACGCTCTTTGTGTTTGAGTTGGCACTGATGGGATTTGCAGAGCACAGAAGATTCCAAGACTGGGCGAAACCAGGGTCTATGGGGAAACAATACTTCTTAGGACTAGAAAAAGGTCTTGGAGGTTCTGGTGATCCAGCATACCCCGGAGGACCTTTGTTTAACCCTCTTGGTTTTGGCAAGGATGAGAAGTCGTTGAAGGATTTGAAGCTGAAGGAAGTCAAGAATGGAAGGTTGGCTATGTTGGCAATCTTGGGTTACTTTGTTCAAGCTCTTGTGACTGGTGTTGGTCCATACCAGAACCTCCTAGATCATCTTGCTGACCCTGTTCACAACAACATCTTGACCAGTCTCAAGTTCCACTGA 996 0.4819 MRANVVVAHLPPYLPPLWLFSGCKHISFIPNLHFCYSLLLHQLQTQQRRSSSITTMPAQALLSSSSLVLSAEAARQTLGPRSHQSSLAFSRKASFIVKAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGVIPPAGTYNYWADSYTLFVFELALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLADPVHNNILTSLKFH 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00174 331 FunFam Chlorophyll a-b binding protein, chloroplastic 112 330 - -
Vimu1g00174 331 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Vimu1g00174 331 Gene3D Chlorophyll a/b binding protein domain 113 330 - -
Vimu1g00174 331 SUPERFAMILY Chlorophyll a-b binding protein 110 327 - -
Vimu1g00174 331 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 75 326 IPR001344 GO:0009765|GO:0016020
Vimu1g00174 331 Pfam Chlorophyll A-B binding protein 122 301 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00174 Vimu-Chr1 961314 962523 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00174 74 331 Chloroplast and Mitochondria Gene Families AT1G61520 85.659 4.83e-164 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00174 K08909 - gmx:100784090 509.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g00174 1 961314 962523 Vimu1g00174 1 961314 962523 ECH