Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00169 ATGGAGATGCAACAGCTCCTCAGTATGGGCTTCCCCGATGAGTTAGCCGCCCAAGCCTTGGCCGCCACCGGCGGTAAATCCACCGTCAAAGCCACCGAATGGATTCTCACTCACAAATCCAGCGCCGCCAACACCTCCACATTCCAGCCCAAGCTTGATCGCTTCTTCCATTCTTCTCAATCCTCCACACCTCCACAATCGCAATCACAGGAGGAAGAAGAAGAAGACGAAGAACCTTCCAAACGTCCCAGGCCTTCTACACTTTCTGCGCAGAATCCATCGCCACAGCCACAGCCACAGCAACAAAACTGGCCCCCTTTCTTCTTCAAAACCGCAGAGAAGAAACACGCCAACACTCACATTCACCAACCCTTGTACGAGCGCTTGCGTCCCAGAACCCTCGACGACGTCGTAGGTCAGGACCATCTCCTCGCCGCCAACTCCCTTCTTCGCTCCGCAATCCAACGCAACCGCCTCCCCTCCATCCTCTTGTGGGGTCCACCTGGTACTGGTAAGACCACTATCGCCAAAGCCATCGTTAAATCTTCAACCTCAACACGTTACCGGTTTGTCTCCTTATCCGCCGTCACTAGTGGCGTTAAGGACGTGAGGGACGCCGTTGACGAGGCCAGAAAACTCAGACTTAAATCCAACCAATCCACCGTTCTCTTCGTGGACGAGGTTCACAGGTTCAACAAGTCCCAGCAGGACTCTTTCTTACCCGTCATTGAAGACGGCAGCATTGTATTCGTTGGAGCCACTACTGAGAACCCTTCTTTCCATTTGATTACACCTCTCTTGTCTCGCTGCCGTGTCCTCACCCTTAACCCTCTCCAACCCCACCACCTTGCCTTGCTTCTAAACCGCGCTGTCAGTGACACTGACAGAGGATTGATGCAAAGCGCGGGGGTTCAAGTTGATGTTAAAGAGGATGTTGTTGATTATATAAGCAACAATTGTGATGGAGATGCTCGGGTGGCCCTTAATGCTCTGGAGATCGCAGCTGTTACTGCAGCAGCGAGGGTACAACATGGTAAACAAAAAGAAGAAGGGGTGGAAGCTCTTCACACAAACGAGGATTATAAGGTTGTTGCTGCTGTTGTTAGTGTTGATGATGCAAGGGAGGCACTTCAGTGCAAGCATCTTGCTTACGATAAAGCTGGGGAAGAGCACTATAATCTAATCAGCGCGCTGCACAAGTCTATGAGGGGAAGCGATGCGAATGCAGCTATTTATTGGTTGGCAAGAATGTTAGAGGGAGGTGAAGAGCCTCTTTACATTGCACGCAGACTCATACGATTCGCAAGTGAGGATGTTGGTTTGGCTGACCCATTAGCTCTTAATCAGGCTGTTTCTTGCTACCAAGCTTGCCACTTCTTGGGAATGCCCGAATGCAATGTAATTCTTGCACAGTGTGTTGCTTACTTGGCCTTGGCACCTAAATCTGTTGCGGTTTATCGAGCCTTAGGGGCAGCGCAGAAGGCAGTGAGGGAATCTGCTGGACAGAATGAGGGGGTGCCTCTACATTTGAGGAATGCTCCAACCAAATTAATGAAGGAAATTGGGTATGCGAAGGGATACATCTACCCCCCGGATAACCCTTCCTCCACACAGACTTACTTGCCACCTTCACTTCAAGGCTACAAGTTCCTTGATTGGCCTGACAGGATTCCTTATGATGGATGA 1686 0.5065 MEMQQLLSMGFPDELAAQALAATGGKSTVKATEWILTHKSSAANTSTFQPKLDRFFHSSQSSTPPQSQSQEEEEEDEEPSKRPRPSTLSAQNPSPQPQPQQQNWPPFFFKTAEKKHANTHIHQPLYERLRPRTLDDVVGQDHLLAANSLLRSAIQRNRLPSILLWGPPGTGKTTIAKAIVKSSTSTRYRFVSLSAVTSGVKDVRDAVDEARKLRLKSNQSTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRVLTLNPLQPHHLALLLNRAVSDTDRGLMQSAGVQVDVKEDVVDYISNNCDGDARVALNALEIAAVTAAARVQHGKQKEEGVEALHTNEDYKVVAAVVSVDDAREALQCKHLAYDKAGEEHYNLISALHKSMRGSDANAAIYWLARMLEGGEEPLYIARRLIRFASEDVGLADPLALNQAVSCYQACHFLGMPECNVILAQCVAYLALAPKSVAVYRALGAAQKAVRESAGQNEGVPLHLRNAPTKLMKEIGYAKGYIYPPDNPSSTQTYLPPSLQGYKFLDWPDRIPYDG 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00169 561 FunFam Putative AAA family ATPase 378 481 - -
Vimu1g00169 561 SUPERFAMILY post-AAA+ oligomerization domain-like 388 554 IPR008921 GO:0003677|GO:0006260
Vimu1g00169 561 SUPERFAMILY UBA-like 3 40 IPR009060 GO:0005515
Vimu1g00169 561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 349 IPR027417 -
Vimu1g00169 561 FunFam Replication-associated recombination protein A 114 277 - -
Vimu1g00169 561 Pfam AAA C-terminal domain 305 403 IPR032423 -
Vimu1g00169 561 Pfam ATPase family associated with various cellular activities (AAA) 162 272 IPR003959 GO:0005524|GO:0016887
Vimu1g00169 561 Gene3D - 278 354 - -
Vimu1g00169 561 Pfam UBA/TS-N domain 4 35 IPR015940 -
Vimu1g00169 561 Gene3D - 378 481 - -
Vimu1g00169 561 Gene3D - 482 557 - -
Vimu1g00169 561 FunFam AAA-type ATPase family protein 278 351 - -
Vimu1g00169 561 Pfam MgsA AAA+ ATPase C terminal 404 550 IPR021886 -
Vimu1g00169 561 MobiDBLite consensus disorder prediction 55 105 - -
Vimu1g00169 561 MobiDBLite consensus disorder prediction 84 105 - -
Vimu1g00169 561 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 38 IPR015940 -
Vimu1g00169 561 Gene3D - 112 276 IPR027417 -
Vimu1g00169 561 SMART AAA_5 158 278 IPR003593 GO:0016887
Vimu1g00169 561 CDD AAA 138 271 - -
Vimu1g00169 561 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 166 185 - -
Vimu1g00169 561 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 557 561 - -
Vimu1g00169 561 CDD HLD_clamp_RarA 278 339 - -
Vimu1g00169 561 Gene3D - 2 40 - -
Vimu1g00169 561 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 1 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00169 Vimu-Chr1 941009 942694 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00169 124 332 Core DNA Replication Machinery Family AT1G77470 28.372 1.46e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00169 K07478 - gmx:100799257 895.575