Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00159 ATGGAAAAGAGAGGTGACGGTGCTGATGCTGAGCCTCAATTTGACGCTGATTTTGTGCCAGATCCTTCCCAGAGATGTACTGGAAATGAAAAGGGTGACAAGGCCCCCAAGATACCTCAGTCCAGACGACCTAATCTATCCTCACTGCAAATACCAGCGTGGTCACTAGATATAGCATTATCTACTTTTGCAAAAACCGATGGTCCTTCAGTTTCACGATCAAGTCCTGGTTCTAGTAGAGGACTTCCTCCAAGACCAAATTCAGCCAAAGTCAGGTCTTCAATGAGAACTTTACTTCCTCAGAAGGGCGTCAAGACAAATAATTGTTCCCAGGATTTTGAAAAGGCAGGTCTAATAGTTCCTAAAACTCCCTTATCAGATGCTCCTTTGGATAAATCTTCCATTCATCTGTCTCTTAAAAATAAGGTCATCTCCCCATCAATAAAAGGTGCACACTCATTGCCAGTTACTCCATTTGCAACTTCAGCTTCAGAGAACGAAGATGGAAGACATCTTGTTTGTGATTCTGGTTCAAGTAAAATGGGTGGTCATCCGCATATTACTCGATCATTTTCAGTCCCAGTTAAAAGCAAAGCCGCTAGTTTAAGGGTTACAGATTCCAGGGGCTTGATTCGTGTAATTTCAGCAAGGCAAACTGTTCGTAGAAAATCAAGTGATGGTGGTTTGGTTCCAGAGATTGCCATTGAAGATGACACTGAGGATATTCCAGAAGAACAAGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGGGGAAGGAGGGAATACACTTAAGATGGAATGCAGTTGTAGAGGTGATCTTGCACTTGCTCACCAGGAATGTGCAGTGAAGTGGTTTAGTATAAAGGGAAACAGGACCTGTGATGTCTGCAAGCGGGAAGTCCAAAACCTCCCGGTAACACTGTTGAAAATTTGCAGTCGTGACACTACAGCTAGGCAGACATCAAATGTGCCACCACGGGCAGAAGTATCTTATTACAGGTATGATTAA 1008 0.4335 MEKRGDGADAEPQFDADFVPDPSQRCTGNEKGDKAPKIPQSRRPNLSSLQIPAWSLDIALSTFAKTDGPSVSRSSPGSSRGLPPRPNSAKVRSSMRTLLPQKGVKTNNCSQDFEKAGLIVPKTPLSDAPLDKSSIHLSLKNKVISPSIKGAHSLPVTPFATSASENEDGRHLVCDSGSSKMGGHPHITRSFSVPVKSKAASLRVTDSRGLIRVISARQTVRRKSSDGGLVPEIAIEDDTEDIPEEQAVCRICLVELGEGGNTLKMECSCRGDLALAHQECAVKWFSIKGNRTCDVCKREVQNLPVTLLKICSRDTTARQTSNVPPRAEVSYYRYD 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00159 335 CDD RING_CH-C4HC3_MARCH 249 297 - -
Vimu1g00159 335 MobiDBLite consensus disorder prediction 1 49 - -
Vimu1g00159 335 Pfam RING-variant domain 249 296 IPR011016 GO:0008270
Vimu1g00159 335 SMART ringv_2 248 297 IPR011016 GO:0008270
Vimu1g00159 335 ProSiteProfiles Zinc finger RING-CH-type profile. 241 303 IPR011016 GO:0008270
Vimu1g00159 335 MobiDBLite consensus disorder prediction 65 94 - -
Vimu1g00159 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 305 IPR013083 -
Vimu1g00159 335 PANTHER OS02G0165000 PROTEIN 31 330 - -
Vimu1g00159 335 MobiDBLite consensus disorder prediction 65 82 - -
Vimu1g00159 335 SUPERFAMILY RING/U-box 245 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00159 Vimu-Chr1 906551 908668 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00159 235 303 C3H Transcription Factor Family AT2G37950 44.444 2.70e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00159 - - gmx:100789461 498.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g02751 2 24812594 24815685 Vimu1g00159 1 906551 908668 PCT