Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00144 ATGGAATATGGGGGGTTGGTGCAAAATTGTGGGTTTGGGAGCTTGTGGGAGTGTGATTCGGCATCGGAAGAAGATTCGATCGAGGAAGTGCTGGCAGAAGGTTGCTGGGTGGAAACGAGTGGGGTTGGGAGCTGCGAGGCTCAGTATATTGGAAGTTCAGAAGCGGAGATGGAGGTGGAGTTGAGGAAGAGATGGTGGATTGGACCCAACAAGGCTAATTCCTCCGTCAAAGACAGACTGGTGGTGGCTGTCTGTTATCTCAGAGAATGCACAAAGAACTCCAATCTCATGATTCAGGTGTGGGTTCCCTTACGCAGAGGTCTTGTAGCTGGGCCTGAGTACCTCACCAGAAATTTAGATGACTGGGTTGCAGTTGAGATGAACATGAACGTCAACATGAACAGCGCAAGGGATGTGAGCCTTCGATTCTACCGAAGCCAGGAGTACCCTCGGCTTCCTTATTACGTGGATCTTCCTGGTTCTCTAGCCCTTCCTGTATTCGAAAGAGGCACCGACACATGCCTCGGTGTCATCCAGATTCTAACGCCTCCCTGCGACACCATCAACTATTGCCCGCAGCTTCTTAACAATAATCTTCTCTGCAATCCTTTCCAGGCATTCGAGGAGGTGTACGAAGCGGCGGTGAATGAGATTGTGGAGGTGATGAGGTGTGTGTGCAGGGCGCAGAATGTGGCATTAGCTCTCAGCTGGGCTCCTTGTTGCATCCAGCAGGGAGGGAAGTGTGGTGGGTATGGCCATTCAACGGAGAATCACTTGTCTACAGTGGAGAGAGCGTGTTTTGTGGGAGATGCACAGGTTCTTGGCTTCAAGGAGGCTTCTTCTCAGCATCATCTCTTGCGAGGACAGGGAATCGTTGGCACGGCCTTCACAACGGCCAAGCCCTGCTTTGCGATCGACGTAGCCGCCTTCACCAGAGCCCAGTATCCTCTGGCTCACCACGCCAACATCTTTGGCCTGCACGCTGCCGTCGCCATTCCTCTAAGGAGCCTCTACACCGATTTTGTCGTCGAGTTCTTCCTTCCTAAGGACTGCCGTGACAGGGAACACCAAAGCCACTTCCTCAGCTCCATATCCCTGATCCTTCAGCAGTCTTGCCGGACCTTGCATGTTGTCATGGGGGACGAGTTCACGTTGCCCCCGCTACCGCCGCCGCCTCCGCCACAGCCGCAGCCATACGTTAGTAACAAAGAGGAGATAGTTATGAGTGAGAAATCGGACTCGCAGTGGCAGGCAGAAGCGTGCGGGTCGTGGATCGCGCACATGATGGAGGCCCAGGCCCAGGAGCAGAAGGCGAAAGGAGTGTGCGTGTCGTTGGAATACCTGGAAGAGGCGAAAGAGGAGTTCAAAGTGACAGGCAAGTGCCGGTGGGAGAGTGGCAGCGGCGGCGCTTACGATGCAGTAGAGGTTCAGGAGCAGCATGTGTTCGGCGATGAATCTCAGACCCAAACACAAACTCAGAATTTTGGCGGGCGACGTGGCAGAAAGTCCGGCGAGAAGAGGCGTACGAAGGCGGAGAAGACCATCAGTTTGCCAGTTCTGAGACAGTACTTCGCCGGAAGCCTTAAAGATGCGGCAAAGAGCATCGGAGTGTGTCCGACAACTCTGAAAAGGATATGCAGACAGCACGGAATCACGAGGTGGCCATCGAGGAAGATAAAGAAAGTAGGGCACTCTTTGAAGAAGCTTCAGCTAGTGATCGATTCGGTGCAGGGTGCAGAGGGTGCCATACAGATCGGCTCTTTCTACAACAGTTTTCCAGAGTTGAGCTCTGCCACCTCTCAGTCGAAGAACAATAACAGCAGCAACAACAACTCCTCCTCCTTGTACGGCCATTCGCCACCGTCATCCTCGTCTCCTTCCACCGTACCTCCTCAACAGCAGCACCTGTATTTCAACACACCCAACGTGTCCCAAACAGGTCTTCGAGTGAAGGCTACTTTTGGGGATGAAAAAATCCGTTTCAGCTTGCAACCTAAGTGGGGTTTCAGAGATTTGGAGGTTGAGATCGGAAGGCGTTTCAATGTGAAGGATTTGGGGAATTTGGTGGTAAAGTATTTGGATGATGAAGGAGAATGGGTTGTTTTGGCCTGCGATGGTGATCTTGAGGAGTGCAAAGATTTGCATACAACCTATGAGAGCCGCACCATTAGACTTGCCCTATTTCAACCTTCTCCTTAA 2199 0.5252 MEYGGLVQNCGFGSLWECDSASEEDSIEEVLAEGCWVETSGVGSCEAQYIGSSEAEMEVELRKRWWIGPNKANSSVKDRLVVAVCYLRECTKNSNLMIQVWVPLRRGLVAGPEYLTRNLDDWVAVEMNMNVNMNSARDVSLRFYRSQEYPRLPYYVDLPGSLALPVFERGTDTCLGVIQILTPPCDTINYCPQLLNNNLLCNPFQAFEEVYEAAVNEIVEVMRCVCRAQNVALALSWAPCCIQQGGKCGGYGHSTENHLSTVERACFVGDAQVLGFKEASSQHHLLRGQGIVGTAFTTAKPCFAIDVAAFTRAQYPLAHHANIFGLHAAVAIPLRSLYTDFVVEFFLPKDCRDREHQSHFLSSISLILQQSCRTLHVVMGDEFTLPPLPPPPPPQPQPYVSNKEEIVMSEKSDSQWQAEACGSWIAHMMEAQAQEQKAKGVCVSLEYLEEAKEEFKVTGKCRWESGSGGAYDAVEVQEQHVFGDESQTQTQTQNFGGRRGRKSGEKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYNSFPELSSATSQSKNNNSSNNNSSSLYGHSPPSSSSPSTVPPQQQHLYFNTPNVSQTGLRVKATFGDEKIRFSLQPKWGFRDLEVEIGRRFNVKDLGNLVVKYLDDEGEWVVLACDGDLEECKDLHTTYESRTIRLALFQPSP 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00144 732 MobiDBLite consensus disorder prediction 484 498 - -
Vimu1g00144 732 Pfam RWP-RK domain 515 562 IPR003035 -
Vimu1g00144 732 Gene3D - 644 732 - -
Vimu1g00144 732 ProSiteProfiles RWP-RK domain profile. 501 582 IPR003035 -
Vimu1g00144 732 ProSiteProfiles PB1 domain profile. 647 730 IPR000270 GO:0005515
Vimu1g00144 732 Pfam PB1 domain 649 729 IPR000270 GO:0005515
Vimu1g00144 732 SUPERFAMILY CAD & PB1 domains 644 731 - -
Vimu1g00144 732 SMART PB1_new 647 730 IPR000270 GO:0005515
Vimu1g00144 732 MobiDBLite consensus disorder prediction 484 511 - -
Vimu1g00144 732 MobiDBLite consensus disorder prediction 596 635 - -
Vimu1g00144 732 PANTHER PROTEIN NLP8 58 727 IPR045012 GO:0003700
Vimu1g00144 732 CDD PB1_NLP 648 729 IPR034891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00144 Vimu-Chr1 820703 823120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00144 9 731 NLP Transcription Factor Family AT2G17150 36.313 2.87e-151 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vimu1g00144 PB1 2.2e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00144 - - var:108322742 1357.81