Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00143 ATGGCTTATTTGATGGGGCTCATCAGCTGGTTTTTTGAGAAGATCTTGGCTGGAAAAACTCACTGGAAACATATTTCAGCAACATCACTGTTGGCTGATGGCAGTAGTTTCTGGGCGATGAAGATATCTAGAGCTTCATTAGTGCCAAAGTCAAGCTACATAGCCAAACCAGCTGCATCGTGGCTTGATGATTTCCTTGTATGGATGTCACCTGAAGCTTTTAGCTGCTGTCGAAAATTCACAAATGGCTCTTATTGTCCACCTGATGATCAGCCACCTTGCTGTTTACCAGATGAAGGACCATGTGGGTTGGGTGGAGTGTGCAAAGACTGCACAACAGTAATATACTTTCTCCCGAGTTTCTTGATTATTACATTGGATAATACTAGCCCAAAAGTTGCAAATATAAACCGAAAGGGTGAATTGTGTTTTCGCCACTCGGATTTGGTCAACGATCGTCCATCTACGGCACAGTTCAGAGAGAAGCTTCCCTGGTTTCTTGATGCACTTCCATCAGCTGATTGTGCAAAGGGTGGTCATGGAGCTTACACCAACAGTGTAGATCTGAATGGTTATGAGAGTGGTGTTATCCAAGCTTCTGAGTTTCGAACTTATCATACACCACTTAATAAACAAGGTGACTATGTTAATGCAATTCAAGCTGCAAGGGATTTTTCGGCGAGAATTTCTGCTTCTTTAAAGTTAAATTCCTCTGTTGAACCTAATGGTGATGACATTATAAGTCATGATGATGTCATCACCTGTCACGTCAACAAAATGACCGAAGTAGAGATGTTGACTGTTATTGTTATTCTTTCTATTATTGTTATTATTATTATTATTTCTGTCATTTACCAATCTAATATTTTACCTGGAATTGCTGGTGTAATGGCAATTTTGGGTATCCAACTCAATGCAGTGTCTGTTGTAAACCTTATTATGGCAATAGGGATTGCTGTGGAATTTTGTGTGCACATAGTCCATGCCTTCACGGTAAGCTTGGGAGATAGGAACGAACGAGCAAAGACAGCATTGTGTACCATGGGGGCTTCTGTATTCAGGTTGACTATGTGTACTTTTGCATTTGGAAATGCCATGGATTGTAACATATCTATCCTTGTACCATGTGTAGCTCACTATGGTGGAATCACACTTACAAAATTAGTCGGAGTTATAGTCCTTTGCTTCGCCACATCTGAAATTTTTGTGGTGTATTACTTCCAGATGTACTTGGCCTTGGTTATCATTGGCTTCTTGCACGGTCTTGTGTTTCTACCATTACTACTTGCCAGCACTCAGCATGACTCTAAGCCCTGGCTGAGGCTTGTGGCCAACATAAATGTACGTTCTGTAGCACAAGGTTGTTCTGCTTACAACATCACCGTAGTTGTAAAGCGGGAGGATTCTATAAAGGCTTTACGGGCAGTTCATTCCAACATTACGGGCACACTGATTGACCAGCCAAACGACCAGCGTACGCAAAGACGACTAATAGCGAGTGAACGCAGAGAAGAGCGAGAAAGAGATATGAGAGAGTTGGATTTGCCATTGACAGATTGTTTGAAGAGAACTGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAACGAAGAAACTGGCTTTTGAAGAAAGCTTATGAGCTTTCCGTTCTTTGTGACGCCGATTGCTCTCATCATCATCTTCTCCACTAG 1692 0.4184 MAYLMGLISWFFEKILAGKTHWKHISATSLLADGSSFWAMKISRASLVPKSSYIAKPAASWLDDFLVWMSPEAFSCCRKFTNGSYCPPDDQPPCCLPDEGPCGLGGVCKDCTTVIYFLPSFLIITLDNTSPKVANINRKGELCFRHSDLVNDRPSTAQFREKLPWFLDALPSADCAKGGHGAYTNSVDLNGYESGVIQASEFRTYHTPLNKQGDYVNAIQAARDFSARISASLKLNSSVEPNGDDIISHDDVITCHVNKMTEVEMLTVIVILSIIVIIIIISVIYQSNILPGIAGVMAILGIQLNAVSVVNLIMAIGIAVEFCVHIVHAFTVSLGDRNERAKTALCTMGASVFRLTMCTFAFGNAMDCNISILVPCVAHYGGITLTKLVGVIVLCFATSEIFVVYYFQMYLALVIIGFLHGLVFLPLLLASTQHDSKPWLRLVANINVRSVAQGCSAYNITVVVKREDSIKALRAVHSNITGTLIDQPNDQRTQRRLIASERREERERDMRELDLPLTDCLKRTENKINRQVTFAKRRNWLLKKAYELSVLCDADCSHHHLLH 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00143 563 PRINTS MADS domain signature 516 536 IPR002100 GO:0003677|GO:0046983
Vimu1g00143 563 PRINTS MADS domain signature 536 551 IPR002100 GO:0003677|GO:0046983
Vimu1g00143 563 Gene3D Multidrug efflux transporter AcrB transmembrane domain 256 437 - -
Vimu1g00143 563 Gene3D - 438 483 - -
Vimu1g00143 563 SUPERFAMILY SRF-like 521 557 IPR036879 GO:0003677|GO:0046983
Vimu1g00143 563 SMART madsneu2 521 558 IPR002100 GO:0003677|GO:0046983
Vimu1g00143 563 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 261 430 - -
Vimu1g00143 563 PANTHER NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 382 488 - -
Vimu1g00143 563 ProSiteProfiles MADS-box domain profile. 521 555 IPR002100 GO:0003677|GO:0046983
Vimu1g00143 563 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 524 555 IPR002100 GO:0003677|GO:0046983
Vimu1g00143 563 Pfam Patched family 252 361 IPR003392 GO:0016020
Vimu1g00143 563 SUPERFAMILY ACT-like 444 480 IPR045865 -
Vimu1g00143 563 Gene3D - 526 558 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00143 Vimu-Chr1 801418 810773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00143 41 430 Miscellaneous Gene Families AT4G38350 60.652 1.17e-146 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vimu1g00143 Patched 8.5e-14 CL0322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00143 K12385 - gmx:100795551 477.248