Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00141 ATGAATTTTGATAGTGATGTATACGGGTTTGGAGTTGTTTTGGTGGAAATACTAACAGGGCTACGAGCACTTGATTCGAACCGTCCAAGCGGGCAACATAATCTAACAGAGTGGGTGAAACCATACCTGCATGACAGAAGAAAGTTGAAGGGCATTATGGATTCTCGATTGGAAGGAAAGTTTCCATCGAAAGCTGCATTCCGTATAGCTCAGCTTGCTTTAAACTGTCTTTCATCTGAACCCAAACAGCGACCATCAATGAAGGAGGTTTTGGAGAGTTTGGAGCGAATTCAAGCAGCCAATGAAAAGCCTGTGGAGCCTAAATTACGATCTAATCATACTCGTCAAGCCCACCAGGCTGTCCACCATCGTTCTCCACTTAAAGACGGTAGCTATTAG 399 0.4411 MNFDSDVYGFGVVLVEILTGLRALDSNRPSGQHNLTEWVKPYLHDRRKLKGIMDSRLEGKFPSKAAFRIAQLALNCLSSEPKQRPSMKEVLESLERIQAANEKPVEPKLRSNHTRQAHQAVHHRSPLKDGSY 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00141 132 ProSiteProfiles Protein kinase domain profile. 1 97 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00141 132 SUPERFAMILY Protein kinase-like (PK-like) 2 118 IPR011009 -
Vimu1g00141 132 Gene3D Transferase(Phosphotransferase) domain 1 1 123 - -
Vimu1g00141 132 MobiDBLite consensus disorder prediction 101 132 - -
Vimu1g00141 132 Pfam Protein tyrosine and serine/threonine kinase 3 94 IPR001245 GO:0004672|GO:0006468
Vimu1g00141 132 PANTHER OS01G0588500 PROTEIN-RELATED 4 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00141 Vimu-Chr1 782284 783072 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00141 5 98 Receptor kinase-like Gene Family AT4G02010 47.872 3.54e-28 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu1g00141 PK_Tyr_Ser-Thr 4.3e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00141 - - vun:114194495 254.988