Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00136 ATGAATGTCCAGCTTGCCTATCGTAGGTTCTTCATGAATCTGCTATTCCTTGCATTCACATTCATCCTATTACATGGATCATCAACAGCAAGAGAAGAAGCCTCCCGACATGATGACGATGATGTCGTAAATATCGGTGCCATATTCACATTGCAAACTATAAACGGCAAAGTTTCCAAAATTGCCATCGAAGCAGCTGAGCAAGACGTAAACTCCGATCCCCGCATCCTGGGTGGACGTAGATTGTCCATAAACATCCATGATTCCAACTTCAGTGGTTTTCTTGGCTTCATTGGGGCCCTCAAGTTCTTGATGACCGACACATTGGCTATAATCGGTCCACAAACCTCAGGAATGGCCCATGTGCTTTCGCATCTCGCAAATGAGCTCCATGTTCCCCTACTCTCCTTCACGGCTCTGGATCCGACCCTAACACCTCTCCAGTATCCTTATTTTGTTCAAACAGCGCCCAGCGATCAGTTCCAGATGACTGCAATTGCGGACATGATTAGTAATTATGGTTGGAGAGAAGTCATAGCAATATTCAATGATGATGATCCGGGTCGAAATGGGGTAACTGTTTTGGGGGATAAACTTGCAGAAAGGGGTTGTAAGTTGTCTTACAAAGCAGCACTGCCTCCTGAACCAAACGCCACTCCAAGCTTTATTACCGGTCAGTTAGTGAAGATTAAGAGCATGGAGTCTCGAATAATCGTTTTACACACCTTCGCCAAAACTGGTCTCCTGGTTTTTGACCTGGCTCAAAAACATGAAATGATGTCCAAAGGGTATGTCTGGATAGCTACTGCATGGTTATCGACTGTTTTAGATTCATCTTCTGCTTCAAACACTTCTAATTCAGTTCTAGGAGCTCTTACCCTTCGCCCTCACACCCCTCAATCCTTAAAAAAACAGGCATTTATCTCAAGGTGGAAACACTTAAGTAATGGCTCAATTGGGTTAAATCCATACGGACTCTATGCGTATGATTCTGTGTGGATGATTGCTCGGGCACTGAACTTATTCTTTGATCAGAAAGGAAAGGTTTCATTTTCCAACAAAAATTTAAGTAGAACGGGGGAAGAGAATCTGAATCTGGGTGCTTTGAGCGTTTTTGAGGGAGGGAAGCAACTACTTGATAACATATTGCGCATTAATATGACGGGATTGACTGGACCTATTCACTTTGGTTCAGATAGATCTCCTCCACATCCATCATTTGAAATCATTAATGTAATTGCCACAGGTTTTCGGAGCATCGGTTACTGGTCTAATTACTCTGGACTCTCCGTAATCACCCCTGAGAAACTTCAGTTGAAGCCTGCCAATCGTTCAATTTCAAGCCAGCATCTAAAGCCTGTCATATGGCCTGGAAATACCATAGAAAGGCCTCGTGGATGGGTTTTCCCACATAATGGGAGGCAACTGAGAATTGGAGTTCCCAACAGAGTTAGTTATAGAGCCATAGTCTCACAAATAAATGCCTCCAATGCAGTTCAAGGATATTGCATAGAGATATTCCGAGCTGCCATAAAACTTCTTCCATATGCAGTTCAGTATAAGTTCGTTCTATTTGGAGATGGAGAAAATAACCCAAGCTACTATGATCTTGTCAACATGATTACTCTTGATGTTTTCGATGTTGCTGTAGGTGACATTGCTATCGTCACTGACCGAACAAAGATTGTGGATTTTACTCAACCATATATAGAGTCGGGGCTAGTTGTGGTTGCTCCGGTAAACAAATTGAAGTCGCATGCTTGGGCTTTCTTGCGACCATTTACTCCAATGATGTGGGGTGTCACTGCATTTTTTTTCCTTTTTGTTGGAACAGTGGTGTGGATTCTTGAACATAGAACAAACGATGACTTTCGGGGGCCGCCAAAGGAACAGATAGTTACGGTTCTTTGGTTTAGTTTCTCAACCATGTTCTTTGCGCACAGAGAAAACACAGTGAGTCCACTTGGTCGAGTTGTGTTGATTATCTGGCTTTTTGTGGTTCTGATAATCAATTCAAGCTACACTGCAAGCTTGACATCAATTCTGACAGTGCAGCAGCTGTCTTCACCCATAACAGGAATTGATAGCTTGATATCCAGCAATGAACGTATAGGATTCCAAGTAGGTTCGTTTGCTGCAAACTATCTAACCGAGCAACTCAACATCCCCAAACATAGACTTGTTCCTCTTGGCTCACCAGAAGAATATGCCATTGCCCTTGAAAGAGGAACAGTTGCAGCAGTGGTGGATGAAAGGCCTTATGTAGAACTATTCCTTTCAGACCACTGCGAATTCTCAATCAGGGGCCAAGAGTTCACCAAAAGTGGATGGGGATTTGCATTTCCTAGGGACTCTCCTTTTGCAGTTGATATGTCAACAGCCATTTTAACTTTATCTGAGAATGGTGAACTTCAGAGGATCCATGAAAAGTGGCTTTCAGAAAAGGCTTGTGCTCATCGCAGTAGTGAGAATGAACAACTTCAATTGAATAGCTTCAAGGGTCTGTTTCTAATATGTGGGATAACATGTTTCGTGGCGCTTTTGATATACTTCTTATCTATGCTACACCAGTTCAGCAAAAAATCCCCTATAAAAGCTGGTCCTTCAAATCGTGACAGCTCGCGTTCTGCACGCATCCAAACATTCCTGGATTTTGTGGACGAGAAAGAAGCTGTATCTCCCAGGAAATTAAAAAGAAAACTGGAACATATTTCATCAAATCGTTTGAGGAGCATATCAAAGAGCAGGAGTGACAGAGTACAGTAA 2766 0.4277 MNVQLAYRRFFMNLLFLAFTFILLHGSSTAREEASRHDDDDVVNIGAIFTLQTINGKVSKIAIEAAEQDVNSDPRILGGRRLSINIHDSNFSGFLGFIGALKFLMTDTLAIIGPQTSGMAHVLSHLANELHVPLLSFTALDPTLTPLQYPYFVQTAPSDQFQMTAIADMISNYGWREVIAIFNDDDPGRNGVTVLGDKLAERGCKLSYKAALPPEPNATPSFITGQLVKIKSMESRIIVLHTFAKTGLLVFDLAQKHEMMSKGYVWIATAWLSTVLDSSSASNTSNSVLGALTLRPHTPQSLKKQAFISRWKHLSNGSIGLNPYGLYAYDSVWMIARALNLFFDQKGKVSFSNKNLSRTGEENLNLGALSVFEGGKQLLDNILRINMTGLTGPIHFGSDRSPPHPSFEIINVIATGFRSIGYWSNYSGLSVITPEKLQLKPANRSISSQHLKPVIWPGNTIERPRGWVFPHNGRQLRIGVPNRVSYRAIVSQINASNAVQGYCIEIFRAAIKLLPYAVQYKFVLFGDGENNPSYYDLVNMITLDVFDVAVGDIAIVTDRTKIVDFTQPYIESGLVVVAPVNKLKSHAWAFLRPFTPMMWGVTAFFFLFVGTVVWILEHRTNDDFRGPPKEQIVTVLWFSFSTMFFAHRENTVSPLGRVVLIIWLFVVLIINSSYTASLTSILTVQQLSSPITGIDSLISSNERIGFQVGSFAANYLTEQLNIPKHRLVPLGSPEEYAIALERGTVAAVVDERPYVELFLSDHCEFSIRGQEFTKSGWGFAFPRDSPFAVDMSTAILTLSENGELQRIHEKWLSEKACAHRSSENEQLQLNSFKGLFLICGITCFVALLIYFLSMLHQFSKKSPIKAGPSNRDSSRSARIQTFLDFVDEKEAVSPRKLKRKLEHISSNRLRSISKSRSDRVQ 921
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00136 921 Gene3D - 61 404 - -
Vimu1g00136 921 Pfam Receptor family ligand binding region 61 412 IPR001828 -
Vimu1g00136 921 SUPERFAMILY Periplasmic binding protein-like I 40 468 IPR028082 -
Vimu1g00136 921 Gene3D - 747 778 - -
Vimu1g00136 921 Gene3D - 158 429 - -
Vimu1g00136 921 SMART GluR_14 477 814 IPR001320 GO:0015276|GO:0016020
Vimu1g00136 921 Gene3D - 473 586 - -
Vimu1g00136 921 Gene3D - 587 722 - -
Vimu1g00136 921 Pfam Ligand-gated ion channel 814 842 IPR001320 GO:0015276|GO:0016020
Vimu1g00136 921 Gene3D - 779 811 - -
Vimu1g00136 921 CDD GluR_Plant 474 812 - -
Vimu1g00136 921 Pfam Bacterial extracellular solute-binding proteins, family 3 493 813 IPR001638 -
Vimu1g00136 921 FunFam Glutamate receptor 471 587 - -
Vimu1g00136 921 SUPERFAMILY Periplasmic binding protein-like II 454 814 - -
Vimu1g00136 921 FunFam Glutamate receptor 587 717 - -
Vimu1g00136 921 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 43 874 IPR015683 -
Vimu1g00136 921 SMART AABind_6 485 815 IPR001638 -
Vimu1g00136 921 FunFam Glutamate receptor 158 315 - -
Vimu1g00136 921 FunFam Glutamate receptor 713 816 - -
Vimu1g00136 921 PIRSF IGluLR_plant 7 920 IPR017103 -
Vimu1g00136 921 CDD PBP1_GABAb_receptor_plant 44 431 IPR044440 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00136 Vimu-Chr1 756855 760144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00136 12 919 Ion Channels AT2G17260 60.022 0.0 1098
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00136 K05387 - gmx:100793969 1281.54