Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00131 ATGGGCAACACATGCCGTGGATCTTTGAAAGGGAAATATATTCAGGGCTTCAGCCAGCCCGAAGACCACTCCAAGCGCACCACCCTTTCTGATCGCTCCGACTCCGAACATCCCTCCTCAGCCAAACAAAATATCAATTCTGCAGAAAACAACAACAGCAACAGCACCGGCATCATCATCAACAACAACAACAATCCACCCTTCAACTCCAAGAGAGACTCCATCATGCGCCGCGGCCTAGACAACCAGGCATATTATGTCTTGGGCCATAAGACTCCCAACATTCGTGATCTATACACTCTTGGCCGCAAATTGGGACAGGGACAATTTGGCACCACTTATTTATGCACCGAGAATTCTACTTCCAATGAATATGCCTGCAAATCTATCTCCAAAAGAAAGTTGATTTCCAAGGAGGATGTTGAGGATGTCAGGAGGGAAATTCAGATAATGCATCATTTAGCTGGTCACAAGAACATTGTCACCATTAAGGGTGCTTACGAGGATCCTCTCTATGTGCATATAGTCATGGAGCTTTGTTCTGGGGGTGAGTTGTTTGATCGCATCATCCAGAGGGGCCACTATACCGAGAGGAAGGCTGCAGAGTTGACCAAAATTATTGTTGGGGTTGTTGAGGCTTGTCATTCCCTTGGGGTCATGCACAGAGATCTCAAGCCAGAAAACTTTCTTTTGGTCAATAAAGATGATGATTTCTCTCTTAAAGCAATTGACTTTGGCCTCTCCGTTTTCTTCAAACCCGGTCAAATTTTCACTGATGTAGTCGGCAGCCCATACTATGTTGCTCCTGAGGTTCTCCTCAAGCATTATGGGCCTGAAGCAGACGTGTGGACAGCCGGTGTCATACTGTACATATTGCTTAGTGGTGTACCACCATTTTGGGCAGAGACCCAACAAGGTATATTTGATGCAGTATTGAAGGGACATATAGATTTTGACTCAGATCCTTGGCCTCTAATATCTGACAGTGGAAAAGATCTGATCAGAAAGATGCTGTGTTCTCAACCTTCAGAACGGTTGACTGCTCATCAAGTGTTATGTCATCCTTGGATATGTGAAAATGGAGTTGCACCTGACAGGGCAATAGACCCTGCTGTTCTTTCTCGTCTTAAACAGTTTTCTGCAATGAATAAGCTGAAGAAGATGGCATTGCGGGTGATTGCTGAAAGTCTATCTGAAGAGGAGATTGCTGGTTTGAGAGAAATGTTTCAGGCTATGGATACCGATAACAGTGGTGCAATCACTTTTGATGAACTCAAAGCTGGTCTAAGAAGATATGGTTCTACCCTTAAAGATGTAGAAATACGTGATCTGATGGAAGCGGCTGATGTCGACAAAAGTGGAACCATAGATTATGGGGAGTTTATTGCTGCTACAGTTCATCTGAACAAACTAGAACGTGAAGAACATCTTATTGCAGCATTCCAATATTTTGACAAGGATGGCAGTGGTTATATTACGGTTGATGAACTTCAACAAGCTTGTGCAGAACATAACATGACTGATGCTTTTCTTGAAGATATTATTAGGGAAGTTGATCAAGATAATGATGGAAGGATTGATTATGGTGAATTTGCTGCAATGATGCAAAAAGGCAATGCTGGAATTGGTAGGAGGACTATGCGCAATAGTCTGAATTTAAGCATGAGGGACGCATCTAGTGCTCAATAG 1689 0.434 MGNTCRGSLKGKYIQGFSQPEDHSKRTTLSDRSDSEHPSSAKQNINSAENNNSNSTGIIINNNNNPPFNSKRDSIMRRGLDNQAYYVLGHKTPNIRDLYTLGRKLGQGQFGTTYLCTENSTSNEYACKSISKRKLISKEDVEDVRREIQIMHHLAGHKNIVTIKGAYEDPLYVHIVMELCSGGELFDRIIQRGHYTERKAAELTKIIVGVVEACHSLGVMHRDLKPENFLLVNKDDDFSLKAIDFGLSVFFKPGQIFTDVVGSPYYVAPEVLLKHYGPEADVWTAGVILYILLSGVPPFWAETQQGIFDAVLKGHIDFDSDPWPLISDSGKDLIRKMLCSQPSERLTAHQVLCHPWICENGVAPDRAIDPAVLSRLKQFSAMNKLKKMALRVIAESLSEEEIAGLREMFQAMDTDNSGAITFDELKAGLRRYGSTLKDVEIRDLMEAADVDKSGTIDYGEFIAATVHLNKLEREEHLIAAFQYFDKDGSGYITVDELQQACAEHNMTDAFLEDIIREVDQDNDGRIDYGEFAAMMQKGNAGIGRRTMRNSLNLSMRDASSAQ 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00131 562 MobiDBLite consensus disorder prediction 39 71 - -
Vimu1g00131 562 MobiDBLite consensus disorder prediction 1 73 - -
Vimu1g00131 562 PANTHER SERINE/THREONINE-PROTEIN KINASE 91 531 - -
Vimu1g00131 562 FunFam Calcium-dependent protein kinase 1 101 184 - -
Vimu1g00131 562 Gene3D Phosphorylase Kinase; domain 1 101 184 - -
Vimu1g00131 562 CDD EFh 476 536 IPR002048 GO:0005509
Vimu1g00131 562 MobiDBLite consensus disorder prediction 24 38 - -
Vimu1g00131 562 SMART efh_1 440 468 IPR002048 GO:0005509
Vimu1g00131 562 SMART efh_1 404 432 IPR002048 GO:0005509
Vimu1g00131 562 SMART efh_1 510 538 IPR002048 GO:0005509
Vimu1g00131 562 SMART efh_1 476 504 IPR002048 GO:0005509
Vimu1g00131 562 ProSitePatterns EF-hand calcium-binding domain. 519 531 IPR018247 -
Vimu1g00131 562 CDD STKc_CAMK 99 356 - -
Vimu1g00131 562 SMART serkin_6 99 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00131 562 Pfam EF-hand domain pair 475 536 IPR002048 GO:0005509
Vimu1g00131 562 Pfam EF-hand domain pair 405 465 IPR002048 GO:0005509
Vimu1g00131 562 SUPERFAMILY Protein kinase-like (PK-like) 78 381 IPR011009 -
Vimu1g00131 562 ProSiteProfiles Protein kinase domain profile. 99 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00131 562 ProSiteProfiles EF-hand calcium-binding domain profile. 400 435 IPR002048 GO:0005509
Vimu1g00131 562 ProSiteProfiles EF-hand calcium-binding domain profile. 472 507 IPR002048 GO:0005509
Vimu1g00131 562 ProSitePatterns EF-hand calcium-binding domain. 413 425 IPR018247 -
Vimu1g00131 562 ProSiteProfiles EF-hand calcium-binding domain profile. 508 541 IPR002048 GO:0005509
Vimu1g00131 562 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Vimu1g00131 562 ProSitePatterns Protein kinases ATP-binding region signature. 105 128 IPR017441 GO:0005524
Vimu1g00131 562 Gene3D - 367 539 - -
Vimu1g00131 562 ProSitePatterns EF-hand calcium-binding domain. 449 461 IPR018247 -
Vimu1g00131 562 Gene3D Transferase(Phosphotransferase) domain 1 185 366 - -
Vimu1g00131 562 FunFam Calcium-dependent protein kinase 1 365 539 - -
Vimu1g00131 562 Pfam Protein kinase domain 99 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g00131 562 ProSitePatterns EF-hand calcium-binding domain. 485 497 IPR018247 -
Vimu1g00131 562 SUPERFAMILY EF-hand 381 538 IPR011992 -
Vimu1g00131 562 FunFam Calcium-dependent protein kinase 5 185 365 - -
Vimu1g00131 562 ProSiteProfiles EF-hand calcium-binding domain profile. 436 471 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00131 Vimu-Chr1 738650 743264 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00131 1 558 EF-hand Containing Proteins AT2G17290 83.005 0.0 952
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vimu1g00131 Pkinase 5.9e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00131 K13412 - gmx:100778173 1040.8