Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00126 ATGGATAATGAGGTGTTAGAATTTGATATTGGGTTGGGCGGAGGAGGCGAGGGAGAATATGACGATGATGGAGGGGACATCGAACACCCAATGGATGAAGATGAATTGGGCGATAGCAGTGGAGGTGGTGGTGGTGGTGTTGGTGGTGGTGGTGTAACCGCTGGAATATATCTTCCGGAGGGGGACCTCTCAGATCTGGAACCCTGCGAGGGCATGGAATTCGAGTCTGAAGAGGCTGCCAAGGCCTTCTACAATTCCTACGCCCGTCGTGTTGGGTTTAGTACACGTGTCAGCTCATCCCGTCGTTCGAGGCGCGATGGAGCTATCATACAGAGGCAATTTGTTTGCGCAAAGGAGGGTTTTCGCAACTTGAATGAGAAGCGCACGAAGGATAGAGAGATCAAGCGTCCCCGAACAATTACCAGAGTCGGATGTAAGGCGTCTTTGTCTGTGAAAATGCAAGACTCTGGGAAGTGGGTGGTGTCTGGCTTTGTTAGAGAACATAATCACGAACTGGTTCCCCCGGACCAGGTGCATTGCCTTCGCTCTCACAGGCAAATATCGGGAGCTGCCAAGACCCTCATTGATACCTTGCAGGCTGCTGGGATGGGTCCTCGTAGAATTATGTCAGCACTGATTAAAGAGTATGGTGGGATTAGCAAAGTCGGCTTCACAGAGGTCGACTGTAGGAACTACATGAGAAATAATAGGCAGAGAAGTTTAGAAGGGGACATTCAACTTGTTCTCGATTATTTGAGACAAATGCACGCCGAAAACCCAAATTTTTTCTATGCTGTGCAAGGGGATGAGGATCAGTCCATAAACAATGTTTTCTGGGCTGATCCCAAGGCAAGGATGAATTATACATTTTTTGGTGACACTGTAACTTTTGACACTACATACCGATCTAATAGGTATCGTTTACCATTTGCTCCCTTTACTGGTGTAAATCATCATGGACAGCCTGTTCTTTTTGGTTGTGCCTTCCTAATTAATGAATCTGAAGCATCATTTGTTTGGCTTTTCAAGACATGGCTTATGGCCATGTCTGGACGTCCACCAGTGTCCATAACAACTGATCATGATTCTGTAATTCGTTCAGCCATAATAGAAGTATTCCCCGAGACCCGACACCGCTTCTGCAAGTGGCATATCTTTAAAAAATGCCAGGAGAAGTTATCCCATATTTTCCTCAAATATCCAAGTTTTGAAGCTGAATTTCACAAATGTGTTAACTTGACTGAGTCAATTGAGGAATTTGAGTCTTGCTGGTCAACACTGGTAGATAAATATGATCTCAGGGATCATGAATGGCTTCAAGCAATATATTCTTCTTGCAGGCATTGGGTACCTGTATATTTGCGAGACACATTCTTTGCAGAAATGTCCATCACTCAGCGAAGTGATAGCATGAACTCTTACTTTGATGGGTATATAAATGCTTCAACCAATTTAAATCAGTTCTTTAAGCTTTATGAGAAAGCACTTGAAAGTCGCAATGAGAAGGAAGTGAGAGCTGATTATGACACAATGAATACTTTGCCAGTATTGAGGACCCCATCTCCAATGGAGAAGCAAGCATCTGAGCTTTACACGAGAAAAATTTTCATGAGGTTCCAGGAGGAGTTAGTTGGCACACTAACATTCATGGCATCCAAAGCTGATGATGATGGGGAGGTCATTACATATAATGTAGCTAAATTTGGAGAGGAACATAAAGGGTACTATGTTAAATTTAATGTTTTGGAGATGAAAGCAACTTGTAGTTGCCAAATGTTTGAGTTTTCAGGCCTTCTTTGCAGACATGTTCTGGCAGTCTTTAGAGTTACCAATGTGCTTACTCTCCCATCTCACTATATATTGAAACGTTGGACAAGAAATGCAAAGAGCAATGTAATATTAGAAGACCATTCTTGTGATGTATATACTTACTATTTGGAATCTCATACAGTCAGATATAACACCCTTCGACATGAGGCCTTTAAATTTGTTGATGAAGGTGCACAGTCTACTGAAACTTACGATGTTGCCATGGATGCTTTACAAGAAGCTGCAAGAAGAGTTTCTCAGGCAATGCAAAATGAGGGAAGAATTCCTATCAGCAATGGAAAATTAAGGAGTCATGTGATGAATGATGAAAGTCATGCTAATTACACAAGTGCATGCCAAGAAGAATGCTTCAGCCAACATACATCTAAGGAAATCTGTCAGTCACCAGAACAGTCTAATAGCTACAAGAGTCCGGTCAAGCTTGCTAAGTACTTTTTGGCAAAAGATGATTTGGATACAAATATTAGAAAGCTTCTGAATGAACTTGAGTGTGCAAATCGGAAGTGCGAAATTTATCGGTCCAACCTGCTTTCAGTTTTGAAAGCTGTTGAGGATCACAAGTTAGAGTTATCTGTTAAGGTGGAAAATATCAAAATAAGCATGAAAGATGGCATCTAA 2448 0.4216 MDNEVLEFDIGLGGGGEGEYDDDGGDIEHPMDEDELGDSSGGGGGGVGGGGVTAGIYLPEGDLSDLEPCEGMEFESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRTKDREIKRPRTITRVGCKASLSVKMQDSGKWVVSGFVREHNHELVPPDQVHCLRSHRQISGAAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQRSLEGDIQLVLDYLRQMHAENPNFFYAVQGDEDQSINNVFWADPKARMNYTFFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCAFLINESEASFVWLFKTWLMAMSGRPPVSITTDHDSVIRSAIIEVFPETRHRFCKWHIFKKCQEKLSHIFLKYPSFEAEFHKCVNLTESIEEFESCWSTLVDKYDLRDHEWLQAIYSSCRHWVPVYLRDTFFAEMSITQRSDSMNSYFDGYINASTNLNQFFKLYEKALESRNEKEVRADYDTMNTLPVLRTPSPMEKQASELYTRKIFMRFQEELVGTLTFMASKADDDGEVITYNVAKFGEEHKGYYVKFNVLEMKATCSCQMFEFSGLLCRHVLAVFRVTNVLTLPSHYILKRWTRNAKSNVILEDHSCDVYTYYLESHTVRYNTLRHEAFKFVDEGAQSTETYDVAMDALQEAARRVSQAMQNEGRIPISNGKLRSHVMNDESHANYTSACQEECFSQHTSKEICQSPEQSNSYKSPVKLAKYFLAKDDLDTNIRKLLNELECANRKCEIYRSNLLSVLKAVEDHKLELSVKVENIKISMKDGI 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00126 815 MobiDBLite consensus disorder prediction 8 52 - -
Vimu1g00126 815 MobiDBLite consensus disorder prediction 19 33 - -
Vimu1g00126 815 Coils Coil 758 785 - -
Vimu1g00126 815 ProSiteProfiles Zinc finger SWIM-type profile. 575 611 IPR007527 GO:0008270
Vimu1g00126 815 Pfam MULE transposase domain 295 388 IPR018289 -
Vimu1g00126 815 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 63 689 IPR031052 GO:0006355
Vimu1g00126 815 Pfam FAR1 DNA-binding domain 83 174 IPR004330 -
Vimu1g00126 815 Pfam SWIM zinc finger 570 609 IPR007527 GO:0008270
Vimu1g00126 815 SMART 26again6 586 613 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00126 Vimu-Chr1 650055 654388 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu1g00126 MULE 3.6e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00126 - - gmx:100793442 1417.91