Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00102 ATGGCGATGGTGGACCAGCCTCTGTATCCATTTGCCGTATTGATCGATGAGCTGAAGAACGAGGATATTCAGCTGCGGCTGAACTCGATCCGACAGCTCTCGACGATCGCTCGGGCGCTCGGCGAGGAGCGAACGCGGAAGGAGCTGATTCCGTTTCTCAGCAAGAACAACGACGATGACGATGAAGTGCTTCTCGCAATGGCTGAAGAATTGGGCGTGTTCATTCCCTACGTGGGAGGCGTTGAACACTCCAACGTGCTTCTTCCTCCGTTGGAGACGCCCTGCACCGTTGAGGAAACTTGCGTCAAAGACAAATCGGTGGAGTCGCTATGTAGGATTGGGGCTCAGATGAAGGAGCAGGATTTGGTTGAACACTTCATTCCTTTAGTTAAGAGGCTGGCTGCTGGCGAGTGGTTCACAGCACGAGTTTCTTCTTGCGGTTTGTTCCATATTGCTTACCCTAGTGCGCCGGAGGTGGTGAAGACTGAACTGAGAACCATATATGGCCAGCTCTGTCAAGATGATATGCCGATGATTAGGAGATCTGGTGCTACAAACTTGGGAAAGTTTGCTGCCACCGTTGAAGCTCCTCACTTGAAATCAGACATCATGTTTGTGTTTGAGGATGTTACACAAGATGATCAAGATTCTGTTCGGCTGCTTGCTGTCGAGGGTTGTGCAGCTCTAGGAAAATTGTTGGAGCCTCAGGATTGTGTGGCACATATTCTTCCTGTCATAGTCAATTTTTCTCAGTTGAATTACTTCTTATACAGGACAAGTCATGGCGTGTTCGTTACATGGTTGCAAATCAACTATATGAGCTATGTGAAGCTGTTGGTCCTGATCCCACCAGGTCAGAATTGGTTCCTGCCTATGTTAGGCTGCTGCGTGATTGAGGCTGAAGTACGTATTGCTGCTGCTGGGAAAGTAACTAAGTTCTTCCGCATTCTATTAGTTCTTTCTTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATCGGCCTTGGAAAAACTGTTCTGTTAGTCTCGATGCTTGGTTTTCATCAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTTCCGCTCACCACTTTATCAAATTGGGCCAAAGAATTCACGAAGTGGCTTCTTGAAATGAATATTATCATATATGTTGGTACTCAGCTAGTTGACAGGCGAGTCATATTGGTTCATATGCAAATGAAGCTATAA 1221 0.4644 MAMVDQPLYPFAVLIDELKNEDIQLRLNSIRQLSTIARALGEERTRKELIPFLSKNNDDDDEVLLAMAEELGVFIPYVGGVEHSNVLLPPLETPCTVEETCVKDKSVESLCRIGAQMKEQDLVEHFIPLVKRLAAGEWFTARVSSCGLFHIAYPSAPEVVKTELRTIYGQLCQDDMPMIRRSGATNLGKFAATVEAPHLKSDIMFVFEDVTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQLNYFLYRTSHGVFVTWLQINYMSYVKLLVLIPPGQNWFLPMLGCCVIEAEVRIAAAGKVTKFFRILLVLSWRNDTNVILADEIGLGKTVLLVSMLGFHQNAQQIHGPFLVVVPLTTLSNWAKEFTKWLLEMNIIIYVGTQLVDRRVILVHMQMKL 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00102 406 ProSiteProfiles HEAT repeat profile. 10 48 IPR021133 -
Vimu1g00102 406 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 4 322 - -
Vimu1g00102 406 Pfam SNF2-related domain 325 390 IPR000330 GO:0005524|GO:0140658
Vimu1g00102 406 Gene3D - 318 392 IPR038718 -
Vimu1g00102 406 SUPERFAMILY ARM repeat 9 251 IPR016024 -
Vimu1g00102 406 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 320 398 IPR027417 -
Vimu1g00102 406 Gene3D - 2 262 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00102 Vimu-Chr1 353864 358166 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vimu1g00102 SNF2_N 3.9e-13 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00102 K03456 - gmx:100799440 489.574