Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00092 ATGGCGATGGTGGACCAGCCTCTGTATCCATTTGCCGTATTGATCGATGAGCTGAAGAACGAGGATATTCAGCTGCGGCTGAACTCGATCCGACAGCTCTCGACGATCGCTCGGGCGCTCGGCGAGGAGCGAACGCGGAAGGAGCTGATTCCGTTTCTCAGCAAGAACAACGACGATGACGATGAAGTGCTTCTCGCAATGGCTGAAGAATTGGGCGTGTTCATTCCCTACGTGGGAGGCGTTGAACACTCCAACGTGCTTCTTCCTCCGTTGGAGACGCCCTGCACCGTTGAGGAAACTTGCGTCAAAGACAAATCGGTGGAGTCGCTATGTAGGATTGGGGCTCAGATGAAGGAGCAGGATTTGGTTGAACACTTCATTCCTTTAGTTAAGAGGCTGGCTGCTGGCGAGTGGTTCACAGCACGAGTTTCTTCTTGCGGTTTGTTCCATATTGCTTACCCTAGTGCGCCGGAGGTGGTGAAGACTGAACTGAGAACCATATATGGCCAGCTCTGTCAAGATGATATGCCGATGGTTAGGAGATCTGGTGCTACAAACTTGGGAAAGTTTGCTGCCACCGTTGAAGCTCCTCACTTGAAATCAGACATCATGTTTGTGTTTGAGGATGTTACAAAAGATGATCAAGATTCTGTTCGGCTGCTTGCTGTCGAGGGTTGTGCAGCTCTAGGAAAATTGTTGGAGCCTCAGGATTGTGTGGCACATATTCTTCCTGTCATAGTCAATTTTTCTCAGGACAAGTCATGGCGTGTTCGTTACATGGTTGCAAATCAACTATATGAGCTATGTGAAGCTGTTGGTCCTGATCCCACCAGGTCAGAATTGGTTCCTGCCTATTGGTTGAAGTGTGGAAAGCTCCGTGATTATCAACTAGAGGGTCTGAACTTTCTTGTTAACAGTTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATCGGCCTTGGAAAAACTGTTCTGTTAGTCTCGATGCTTGGTTTTCATCAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTTCCGCTCACCACTTTATCAAATTGGGCCAAAGAATTCACGAAGTGGCTTCTTGAAATGAATATTATCATATATGTTGGTACTCAGCTAGTTGACAGGCGAGTCATATTGGTTCATATGCAAATGAAGCTATAA 1176 0.4668 MAMVDQPLYPFAVLIDELKNEDIQLRLNSIRQLSTIARALGEERTRKELIPFLSKNNDDDDEVLLAMAEELGVFIPYVGGVEHSNVLLPPLETPCTVEETCVKDKSVESLCRIGAQMKEQDLVEHFIPLVKRLAAGEWFTARVSSCGLFHIAYPSAPEVVKTELRTIYGQLCQDDMPMVRRSGATNLGKFAATVEAPHLKSDIMFVFEDVTKDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPDPTRSELVPAYWLKCGKLRDYQLEGLNFLVNSWRNDTNVILADEIGLGKTVLLVSMLGFHQNAQQIHGPFLVVVPLTTLSNWAKEFTKWLLEMNIIIYVGTQLVDRRVILVHMQMKL 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00092 391 ProSiteProfiles HEAT repeat profile. 10 48 IPR021133 -
Vimu1g00092 391 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 276 383 IPR027417 -
Vimu1g00092 391 Gene3D - 2 286 IPR011989 -
Vimu1g00092 391 SUPERFAMILY ARM repeat 9 286 IPR016024 -
Vimu1g00092 391 Pfam SNF2-related domain 311 375 IPR000330 GO:0005524|GO:0140658
Vimu1g00092 391 ProSiteProfiles HEAT repeat profile. 203 241 IPR021133 -
Vimu1g00092 391 Gene3D - 287 377 IPR038718 -
Vimu1g00092 391 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 4 285 - -
Vimu1g00092 391 ProSiteProfiles HEAT repeat profile. 242 280 IPR021133 -
Vimu1g00092 391 Pfam HEAT repeat 242 270 IPR000357 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00092 Vimu-Chr1 313917 318219 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vimu1g00092 SNF2_N 2.2e-13 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00092 K03456 - gmx:100799440 543.502