Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04976 ATGAACGGGAAAGCCTCCATCTCTAAGGAGCTCAATGCCAAACACGCCAAGATCTTGGAAGGACTTCTTAAGCTGCCCGAGAACAGGGAATGTGCAGACTGCCGGAACAGGGCACCGCGATGGGCTAGTGTTAACCTAGGGATTTTCATTTGCATGCAATGTTCAGGAATTCACCGAAGCCTTGGAGTTCATATATCGAAGGTGCGGTCCACAACTTTAGATACGTGGTTACCTGACCAAGTTTCTTTCATGCAATTCATGGGCAATGTAAAGTCAAATAGGCACTGGGAAGCAGAAATGCCACCAAATTTTGATAGAAGTAAATTGGCAATGGAGAAGTTTATCCGTATGAAGTATGTAGAGAAAAGATGGGCTTCAAAAGATGAAGAGCAATCAACATCAAATGGAGGCATTATGAAGAACAACAGGAGACTCTCTCTTGAAGAAAGCATTCTTGCAAACCACGTCGTACAAATTCTACCCCCAATAACAACACCTCGAGGGGGCTTTATAGACACGCAAAAGAAGAATTCTTCTCCATTTAAAAGGCCATCCTCATCTGTTGATTTTGACAAGTCTACAAAGAGCATCGCTACTGGGAACATTTTCAACTTGCTTTGCATCTATGACGATAACAAAAATTTCTCAACAGTGCCACCTTCAACTTGGGCAACATTTGATTCCTTAAGGCTACTACTTATGCAGTACAACTTCTGCTATCTCACTGTCCCAATTCCAATAGTTTTTACTCCCTTGTTAGATAAAATTGCCTTTCTATAA 780 0.4179 MNGKASISKELNAKHAKILEGLLKLPENRECADCRNRAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQVSFMQFMGNVKSNRHWEAEMPPNFDRSKLAMEKFIRMKYVEKRWASKDEEQSTSNGGIMKNNRRLSLEESILANHVVQILPPITTPRGGFIDTQKKNSSPFKRPSSSVDFDKSTKSIATGNIFNLLCIYDDNKNFSTVPPSTWATFDSLRLLLMQYNFCYLTVPIPIVFTPLLDKIAFL 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04976 259 MobiDBLite consensus disorder prediction 168 187 - -
Vimu11g04976 259 Gene3D Arf GTPase activating protein 2 134 IPR038508 -
Vimu11g04976 259 SMART arf_gap_3 16 133 IPR001164 GO:0005096
Vimu11g04976 259 FunFam stromal membrane-associated protein 1 isoform X1 1 130 - -
Vimu11g04976 259 SUPERFAMILY ArfGap/RecO-like zinc finger 16 126 IPR037278 -
Vimu11g04976 259 MobiDBLite consensus disorder prediction 170 187 - -
Vimu11g04976 259 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 132 IPR001164 GO:0005096
Vimu11g04976 259 CDD ArfGap 19 119 - -
Vimu11g04976 259 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Vimu11g04976 259 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Vimu11g04976 259 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Vimu11g04976 259 Pfam Putative GTPase activating protein for Arf 17 127 IPR001164 GO:0005096
Vimu11g04976 259 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 141 IPR044520 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04976 Vimu-Chr11 69039889 69043398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04976 19 124 C2H2 Transcription Factor Family AT3G07940 46.429 5.45e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04976 K12486 - gmx:100803735 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04976 11 69039889 69043398 Vimu8g01748 8 23359612 23364017 PCT