Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04971 ATGGAGTATGGGAGTGGAGGCGGTGGCTCTCAGTCTGCAGGCGAACACGATGCTTCCGATTCCCAGGAGAAGCGAAAGCGCTATCATCGTCATACTTCCACCCAGATTCAGAGGCTTGAGTCAATGTTCAGAGAGTGTCCCCATCCAGATGAGAAGCAAAGGTTGCAGTTAAGCAGAGAGTTAGGCTTGGCCCCTCGACAGATCAAGTTCTGGTTTCAGAACAGGAGGACCCAGATGAAGGCCCAGCACGAGAGAGCTGACAACTGTACTCTTCGGGCTGACAATGACAAGATACGCTGCGAGAACATAGCTATCAGAGAGGCTTTGAAAAATGTTATCTGCCCCTCTTGTGGTGGCCCTCCCCTCAATGATGATTCCTATTTTGACGACCAAAAGTTGCGATTAGAGAATGCTCACCTCAAAGAAGAGCTTGATAGAGTGTCCAGCATTGCTGCCAAGTACATTGGAAGACCAATTTCCCAGCTCCCTCCTGTTCAGCCTATTCATTTATCGTCTCTCGACTTGTCGATGTCGTGTTTTGGAAACCAAGCGATGGTTGATCATGTTCTTGCACCTTCTCCTTCCCTTAATCTCGATCTTCTCTCTGCGGGGACTTCCTCTTCCGTGCCAAATTTTCCTTATCAGCCTCCTTACCTTTCGGACATGGACAAGTCCCTCATGTCCGACATTGCTTCCAATGCCATGGAAGAATTACTTCGGCTGGTGCAGACAAACGAACCCTTGTGGCTCAAGTCCAACGTCGATGGGAGAGATGTCCTTAATTCTGATGCCTACGAAAGAATTTTCCCCAAGTCCAATAGTCGCCCCAAGACTCCCAATCTTCGCCTTGAGGCATCACGAGATTCCGCAGTCGTATTAATGAATAGTTTGGCTTTGGTTGACATGTTTATGGACCCAAACAAGTGGACGGAACTTTTTCCCACTATTGTCTCAGTTGCAACGACTATTCAAGTCATATCTTCTGGGATGATGGGTGGTTCTTTGCAATTGATGTATGCGGAGTTGCAAGTGCTTTCTCCCCTTGTTTCTTCTCGGGAGTTCTACTTCCTTCGCTATTGCCAGCAAATTGAGAAAGGTACATGGGCAGTGGTGGACGTTTCTTACGATTTTCCTCAAGACAGCCACTTTGGTCCTCACTTTCGGTCTCGTCGTCGTCCTTCTGGTTGCTTGATCCAAGACATGCCGGACGGGCATTCCAAGATTACTTGGGTTGAACACGTAGAGATCGAAGATAAAACTCTGCCTCATCGGCTTTACAGAAATCTTATTTATAGTGGGATGGCATTTGGCGCTGAAAGATGGCTAGCAACTCTCCAGAGAATGTGTGAAAGACTTACATATCTGATGGTTACATCCGATTCAACCGTGGATAATCCTGGAGGAGTAATTTCATCTGCCGAGGGCAAGAGGAGCATGATGAAACTAGCTCAAAGGATGGTCACGAATTTTTGTGGCAGCATTGGCACTGCAAGTGGCCGGCGATGGACCACAATCTCCGGGTTGAATGAAATATTAATCAGAGTCACTGTCCACAAAAGCTCAAATCCTGGACAACCTAATGGTGTGGTGCTAAGTGCAGCCACTACCATTTGGCTCCCCACCCCTCCACACACTGTCTTCAATTTCTTCAAGGATGAAACAAAAAGACCTCAGTGGGATGTTCTTTCCAACGGTAATGCAGTGCAAGAGGTTGCCCAGATAACCAATGGTCAAAATGCTGGTAACAGCATATCAGTTCTTCGAGCTTTCAACACGAGTCAAAACATGTTAATACTCCAAGAGAGCTGCATAGATTCGTCTGGTTCACTTGTGGTTTATTGCCCGGTTGATCTGCCATCGATCAACATAGCAATGAGTGGTGAAGACACTTCGTGCATTCCATTGCTACCAAATGGGTTTACCATTTTGCCAGATGGGGAGACGGAGCAGGAAGGAGATGGAGCATCAACCAGTTCAAACGCAAACAGGAACAAGGCAAGGTGTGGGGGTTCGCTAGTCACAGTTGCATTTCAGATTCTAGTGAGCTCCTCGCCATCTGCCAAGTTGAATATGGAAGTGACAACTGTTTGTAATCTCATTGGCTCCACTGTCCAGCAAATAAAGGCTTCATTGAGTTGTCCTACCTAG 2148 0.4716 MEYGSGGGGSQSAGEHDASDSQEKRKRYHRHTSTQIQRLESMFRECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCTLRADNDKIRCENIAIREALKNVICPSCGGPPLNDDSYFDDQKLRLENAHLKEELDRVSSIAAKYIGRPISQLPPVQPIHLSSLDLSMSCFGNQAMVDHVLAPSPSLNLDLLSAGTSSSVPNFPYQPPYLSDMDKSLMSDIASNAMEELLRLVQTNEPLWLKSNVDGRDVLNSDAYERIFPKSNSRPKTPNLRLEASRDSAVVLMNSLALVDMFMDPNKWTELFPTIVSVATTIQVISSGMMGGSLQLMYAELQVLSPLVSSREFYFLRYCQQIEKGTWAVVDVSYDFPQDSHFGPHFRSRRRPSGCLIQDMPDGHSKITWVEHVEIEDKTLPHRLYRNLIYSGMAFGAERWLATLQRMCERLTYLMVTSDSTVDNPGGVISSAEGKRSMMKLAQRMVTNFCGSIGTASGRRWTTISGLNEILIRVTVHKSSNPGQPNGVVLSAATTIWLPTPPHTVFNFFKDETKRPQWDVLSNGNAVQEVAQITNGQNAGNSISVLRAFNTSQNMLILQESCIDSSGSLVVYCPVDLPSINIAMSGEDTSCIPLLPNGFTILPDGETEQEGDGASTSSNANRNKARCGGSLVTVAFQILVSSSPSAKLNMEVTTVCNLIGSTVQQIKASLSCPT 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04971 715 FunFam Homeobox-leucine zipper protein HDG1 12 98 - -
Vimu11g04971 715 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Vimu11g04971 715 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 23 711 IPR042160 -
Vimu11g04971 715 Pfam Homeodomain 25 80 IPR001356 GO:0003677
Vimu11g04971 715 MobiDBLite consensus disorder prediction 644 663 - -
Vimu11g04971 715 SUPERFAMILY Bet v1-like 474 695 - -
Vimu11g04971 715 SUPERFAMILY Bet v1-like 221 452 - -
Vimu11g04971 715 CDD homeodomain 24 83 IPR001356 GO:0003677
Vimu11g04971 715 Gene3D - 11 95 - -
Vimu11g04971 715 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Vimu11g04971 715 FunFam Homeobox-leucine zipper protein GLABRA 2 229 450 - -
Vimu11g04971 715 MobiDBLite consensus disorder prediction 1 33 - -
Vimu11g04971 715 CDD START_ArGLABRA2_like 224 450 - -
Vimu11g04971 715 Gene3D - 228 451 IPR023393 -
Vimu11g04971 715 SMART START_1 229 451 IPR002913 GO:0008289
Vimu11g04971 715 Pfam START domain 230 451 IPR002913 GO:0008289
Vimu11g04971 715 ProSiteProfiles START domain profile. 220 454 IPR002913 GO:0008289
Vimu11g04971 715 SUPERFAMILY Homeodomain-like 8 82 IPR009057 -
Vimu11g04971 715 SMART HOX_1 23 86 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04971 Vimu-Chr11 69009087 69012046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04971 20 715 Homeobox Transcription Factor Family AT1G73360 62.659 0.0 866
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vimu11g04971 START 1.9e-49 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04971 K09338 - gmx:100796042 1234.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04971 11 69009087 69012046 Vimu8g01732 8 23149655 23154008 PCT