Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04967 TTGTTGCTCAGAACTGGTTTTGAGGAGGACAAGAATTTCCATGTTGTTTTAAATTCTGTAATAGCTGGAAGGTATCATGTTACGGAGTATCTGGGATCTGCTGCATTTAGCAAAGCCATACAAGCTCATGACCTACATACAGGCATGGATGTTTGTGTTAAAATTATAAAGAACAACAAGGACTTTTTTGACCAAAGTCTTGATGAGATCAAGCTTCTCAAGTATGTCAATAAGCATGATCCTGGAGACAAGTATCACATTCTTCGATTATATGATTATTTCTATTATCGAGAACATTTGTTAATAGTATGTGAACTACTTAAAGCAAACTTGTACGAGTTTCATAAATTTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGTCGATTACCATTCAGTGTTTGGAAGCACTTCAGTTTTTGCATAGCCTTGGACTAATACACTGTGACTTGAAACCAGAGAATATTTTGGTTAAGAGCTATAGTAGATGTGAGGTGAAGGTCATTGATCTTGGAAGTAGTTGTTTTGAGACGGATCACCTTTGCTCTTATGTTCAGTCAAGGTCCTATCGTGCTCCTGAGGTTATTTTGGGACTTTCATACGATAAGAAGATTGATATCTGGTCTCTTGGCTGCATCTTGGCAGAACTTTGTACTGGCAATGTCCTCTTCCAAAATGATTCGCCTGCAACATTACTTGCACGGGTGATCGGGATCATTGGTCCAATTGATCAAGGTATGCTTGCAAAAGGACGGGACACCTATAAGTACTTCACCAAAAATCATATGCTTTATGAAAGGAATCAGGAAACCAACAGGTTAGAATACTTGATTCCAAAAAAGACATCCTTGAGGCATAGATTGCCAATGGGAGACCAAGGCTTCATTGACTTTGTGGCTCACTTACTTGAAGTCAACCCTAAGAAGCGACCCTCTGCATCTGAAGCCCTGAAGCATCCATGGTTATCGTACCCTTATGAACCCATATCATCTTAA 1011 0.3917 MLLRTGFEEDKNFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNNKDFFDQSLDEIKLLKYVNKHDPGDKYHILRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHSLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLSYDKKIDIWSLGCILAELCTGNVLFQNDSPATLLARVIGIIGPIDQGMLAKGRDTYKYFTKNHMLYERNQETNRLEYLIPKKTSLRHRLPMGDQGFIDFVAHLLEVNPKKRPSASEALKHPWLSYPYEPISS 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04967 336 Gene3D Phosphorylase Kinase; domain 1 19 106 - -
Vimu11g04967 336 CDD PKc_DYRK_like 25 327 - -
Vimu11g04967 336 Pfam Protein kinase domain 25 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04967 336 SUPERFAMILY Protein kinase-like (PK-like) 13 329 IPR011009 -
Vimu11g04967 336 FunFam Putative serine/threonine-protein kinase dyrk2 19 106 - -
Vimu11g04967 336 SMART serkin_6 25 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu11g04967 336 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Vimu11g04967 336 Gene3D Transferase(Phosphotransferase) domain 1 79 327 - -
Vimu11g04967 336 PANTHER DUAL SPECIFICITY PROTEIN KINASE 5 327 - -
Vimu11g04967 336 FunFam Serine/threonine-protein kinase ppk15 104 328 - -
Vimu11g04967 336 ProSiteProfiles Protein kinase domain profile. 25 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04967 Vimu-Chr11 68988195 68990843 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04967 22 327 MAP Kinase Gene Family AT3G18040 30.556 1.70e-30 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Vimu11g04967 Pkinase 1.1e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04967 - - cit:102625951 678.322