Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04963 ATGGCCTCCCTTGTAAGGATTAACTCATCTCCCTCCTCTCTTCCCACTTCTCAGCCCTTTTCCTTTCCCCAGAATGCTACCACTCCCACTAATAAAAGAAAGAGAAGACCTGCAGGAACACCAGATCCAGATGCAGAAGTGGTGTCCCTCTCACCCAAGACCTTGCTTGAATCAGATCGTTTCGTCTGTGAGATCTGCAACCAGGGATTCCAGAGAGACCAGAATCTTCAGATGCACCGGCGCCGCCACAAGGTTCCCTGGAAGCTCTTGAAGAGGGAGACGCCACTGGTGAAGAAGCGAGTCTTCGTTTGCCCGGAGCCTACTTGCTTGCACCATGACCCGTGCCACGCTCTTGGTGATCTTGTCGGCATAAAGAAGCACTTCAGAAGAAAACACAGCAGTCACAAGCAATGGGTCTGCGAGAGATGCTCCAAAGGCTACGCAGTGCAGTCTGATTACAAAGCACATCTTAAAACGTGTGGCACCCGAGGCCACTCTTGCGATTGTGGCCGCGTTTTCTCAAGGGTGGAGAGCTTTATTGAACACCAAGACGCGTGCAACGTGGGGCGGTTGCTGCCAGAAACACAGGCAGTGCAAGCTGCTGCATGCTTGTCTCGAACAGCTTCAAGCCCTTCTAGCGAAAACAATTTCAGCACAGGTGCCCCTTTGCAAATCGGTGTAATAATTCCGAAGCCCCCGGAAACAGTAGTAGAACCAGCCTTATTCAGCAACACTACCACGGCACAAACCAACAACGACAACAAAGTGAACAGGCTCCAGCCCAACCTTGAGCTTCAGCTCTCTACAGCCACTCCTATTGAAATGATCGGGGCTGCGTACAATAAGAGAGAGGGAAACCCCTCTGCACAGTTGCAGTTATCGATAGGTTCATTGGAAAAAGGGTGCATGAGAGAGAAGTCATTGGGAGAAAGGGTTGAAGATGAGGCACGTGAGCAGCTGAGGATAGCGGTGGCGGAAAAAGCGTATGCGGAAGAGGCAAGGAAGCAAGCCAAGAGGCAGATGGAGCAGGCGGAACTGGAGTTCACTAATGCCAAAAGGATAAGACAACAAGCGCTAGCGGAACTGGACAAAGCCTGCGCCTTGAAGGACCACGCAATCAAACAGATCAATTCAACTATGCTTCAGATCACCTGCCTTGCTTGCAAGCACCATTTCCAGTCGCCAACCGTAACGTGTACTGCTCCTTCCGACCAGACCTCTTTCGTCTTCAGTTACATAACAACAGACGCTGCCCAAGTTGGAAAACATCGTGTCAAACCCATTAACTCATAG 1293 0.5089 MASLVRINSSPSSLPTSQPFSFPQNATTPTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRFVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPLVKKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSSHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNVGRLLPETQAVQAAACLSRTASSPSSENNFSTGAPLQIGVIIPKPPETVVEPALFSNTTTAQTNNDNKVNRLQPNLELQLSTATPIEMIGAAYNKREGNPSAQLQLSIGSLEKGCMREKSLGERVEDEAREQLRIAVAEKAYAEEARKQAKRQMEQAELEFTNAKRIRQQALAELDKACALKDHAIKQINSTMLQITCLACKHHFQSPTVTCTAPSDQTSFVFSYITTDAAQVGKHRVKPINS 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04963 430 Coils Coil 327 361 - -
Vimu11g04963 430 SUPERFAMILY beta-beta-alpha zinc fingers 61 83 IPR036236 -
Vimu11g04963 430 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 376 IPR031140 -
Vimu11g04963 430 MobiDBLite consensus disorder prediction 1 48 - -
Vimu11g04963 430 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Vimu11g04963 430 MobiDBLite consensus disorder prediction 1 34 - -
Vimu11g04963 430 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Vimu11g04963 430 FunFam protein indeterminate-domain 12-like 40 108 - -
Vimu11g04963 430 Gene3D Classic Zinc Finger 123 201 - -
Vimu11g04963 430 SMART c2h2final6 102 132 IPR013087 -
Vimu11g04963 430 SMART c2h2final6 138 165 IPR013087 -
Vimu11g04963 430 SMART c2h2final6 61 83 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04963 Vimu-Chr11 68962873 68964985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04963 28 415 C2H2 Transcription Factor Family AT2G01940 54.839 9.77e-143 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu11g04963 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04963 K25871 - gmx:100798167 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04963 11 68962873 68964985 Vimu11g04963 11 68962873 68964985 ECH
Vimu11g04963 11 68962873 68964985 Vimu8g01697 8 22796615 22798939 PCT